Paper Details

Paper Title

A comprehensive collection of systems biology data characterizing the host response to viral infection.

Paper Journal Title

Sci Data

Paper Citation Count

Paper Publication Year

2014

Bio Mention

H5N1 influenza A viruses, Human, Infectious Diseases, RNA, SARS-CoV, avian, severe acute respiratory syndrome coronavirus

Mesh Descriptor

Animals, Data Collection, Databases, Factual, Host-Pathogen Interactions, Humans, Influenza A virus, Influenza, Human, Mice, Orthomyxoviridae Infections, Systems Biology

Author Name	Affiliation
Brian D Aevermann	J. Craig Venter Institute
Brian D Aevermann	J. Craig Venter Institute
Brett E Pickett	J. Craig Venter Institute
Sanjeev Kumar
Edward B Klem
Sudhakar Agnihothram	University of North Carolina at Chapel Hill
Peter S Askovich	Seattle Biomedical Research Institute
Armand Bankhead	Oregon Clinical & Translational Research Institute , Department of Medical Informatics and Clinical Epidemiology, Oregon Health Sciences University
Meagan E Deming	University of North Carolina at Chapel Hill
Victoria S Carter	University of Washington
Jean Chang	University of Washington
Therese R W Clauss	Pacific Northwest National Laboratory
Therese R W Clauss	Pacific Northwest National Laboratory
Pradyot Dash	St. Jude Children's Research Hospital
Alan H Diercks	Seattle Biomedical Research Institute
Amie J Eisfeld	Influenza Research Institute, University of Wisconsin-Madison
Amy L Ellis-Connell	Influenza Research Institute, University of Wisconsin-Madison
Shufang Fan	Influenza Research Institute, University of Wisconsin-Madison
Martin T Ferris	University of North Carolina at Chapel Hill
Martin T Ferris	University of North Carolina at Chapel Hill
Lisa E Gralinski	University of North Carolina at Chapel Hill
Lisa E Gralinski	University of North Carolina at Chapel Hill
Richard Green	University of Washington
Marina A Gritsenko	Pacific Northwest National Laboratory
Marina A Gritsenko	Pacific Northwest National Laboratory
Masato Hatta	Influenza Research Institute, University of Wisconsin-Madison
Robert A Heegel	Pacific Northwest National Laboratory
Jon M Jacobs	Pacific Northwest National Laboratory
Jon M Jacobs	Pacific Northwest National Laboratory
Sophia Jeng	Oregon Clinical & Translational Research Institute
Laurence Josset	University of Washington
Shari M Kaiser	Seattle Biomedical Research Institute
Sara M Kelly	University of Washington
Sara M Kelly	University of Washington
G Lynn Law	University of Washington
Chengjun Li	Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences
Jiangning Li	Seattle Biomedical Research Institute
Casey Long	University of North Carolina at Chapel Hill
Maria L Luna	Pacific Northwest National Laboratory
Melissa M Matzke	Pacific Northwest National Laboratory
Jason E McDermott	Pacific Northwest National Laboratory
Jason E McDermott	Pacific Northwest National Laboratory
Vineet D Menachery	University of North Carolina at Chapel Hill
Thomas O Metz	Pacific Northwest National Laboratory
Hugh D Mitchell	Pacific Northwest National Laboratory
Matthew E Monroe	Pacific Northwest National Laboratory
Matthew E Monroe	Pacific Northwest National Laboratory
Garnet Navarro	Seattle Biomedical Research Institute
Gabriele Neumann	Influenza Research Institute, University of Wisconsin-Madison
Rebecca L Podyminogin	Seattle Biomedical Research Institute

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Dataset	Description	Source Link
Influenza Research Database	Influenza Research Database	Link
Influenza Research Database	Influenza Research Database	Link
Influenza Research Database	Influenza Research Database	Link
Influenza Research Database	Influenza Research Database	Link
Influenza Research Database	Influenza Research Database	Link
Influenza Research Database	Influenza Research Database	Link
Influenza Research Database	Influenza Research Database	Link
Influenza Research Database	Influenza Research Database	Link
Influenza Research Database	Influenza Research Database	Link
Influenza Research Database	Influenza Research Database	Link
PeptideAtlas	Peptides identified in LC-MS/MS proteomics experiments	Link
PeptideAtlas	PeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. All results of sequence and spectral library searching are subsequently processed through the Trans Proteomic Pipeline to derive a probability of correct identification for all results in a uniform manner to insure a high-quality database, along with false discovery rates at the whole atlas level. Results may be queried and browsed at the PeptideAtlas web site. The raw data, search results, and full builds can also be downloaded for other uses.	Link
PeptideAtlas	Peptides identified in LC-MS/MS proteomics experiments	Link
PeptideAtlas	PeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. All results of sequence and spectral library searching are subsequently processed through the Trans Proteomic Pipeline to derive a probability of correct identification for all results in a uniform manner to insure a high-quality database, along with false discovery rates at the whole atlas level. Results may be queried and browsed at the PeptideAtlas web site. The raw data, search results, and full builds can also be downloaded for other uses.	Link
PeptideAtlas	Peptides identified in LC-MS/MS proteomics experiments	Link

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