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Paper Details

Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics.
Curr Protoc Bioinformatics
46
2014
PASSEL, SRMAtlas
Author NameAffiliation
Ulrike KusebauchInstitute for Systems Biology
Ulrike KusebauchInstitute for Systems Biology
Eric W DeutschInstitute for Systems Biology
Eric W DeutschInstitute for Systems Biology
David S CampbellInstitute for Systems Biology
Robert L MoritzInstitute for Systems Biology
Robert L MoritzInstitute for Systems Biology
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Datasets

PeptideAtlasPeptides identified in LC-MS/MS proteomics experimentsLink
PeptideAtlasPeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. All results of sequence and spectral library searching are subsequently processed through the Trans Proteomic Pipeline to derive a probability of correct identification for all results in a uniform manner to insure a high-quality database, along with false discovery rates at the whole atlas level. Results may be queried and browsed at the PeptideAtlas web site. The raw data, search results, and full builds can also be downloaded for other uses.Link
PeptideAtlasPeptides identified in LC-MS/MS proteomics experimentsLink
PeptideAtlasPeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. All results of sequence and spectral library searching are subsequently processed through the Trans Proteomic Pipeline to derive a probability of correct identification for all results in a uniform manner to insure a high-quality database, along with false discovery rates at the whole atlas level. Results may be queried and browsed at the PeptideAtlas web site. The raw data, search results, and full builds can also be downloaded for other uses.Link
PeptideAtlasPeptides identified in LC-MS/MS proteomics experimentsLink
PeptideAtlasPeptides identified in LC-MS/MS proteomics experimentsLink
PeptideAtlasPeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. All results of sequence and spectral library searching are subsequently processed through the Trans Proteomic Pipeline to derive a probability of correct identification for all results in a uniform manner to insure a high-quality database, along with false discovery rates at the whole atlas level. Results may be queried and browsed at the PeptideAtlas web site. The raw data, search results, and full builds can also be downloaded for other uses.Link
PeptideAtlasPeptides identified in LC-MS/MS proteomics experimentsLink
PeptideAtlasPeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. All results of sequence and spectral library searching are subsequently processed through the Trans Proteomic Pipeline to derive a probability of correct identification for all results in a uniform manner to insure a high-quality database, along with false discovery rates at the whole atlas level. Results may be queried and browsed at the PeptideAtlas web site. The raw data, search results, and full builds can also be downloaded for other uses.Link
PeptideAtlasPeptides identified in LC-MS/MS proteomics experimentsLink
PeptideAtlasPeptides identified in LC-MS/MS proteomics experimentsLink
PeptideAtlasPeptides identified in LC-MS/MS proteomics experimentsLink
PeptideAtlasPeptides identified in LC-MS/MS proteomics experimentsLink
PeptideAtlasPeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. All results of sequence and spectral library searching are subsequently processed through the Trans Proteomic Pipeline to derive a probability of correct identification for all results in a uniform manner to insure a high-quality database, along with false discovery rates at the whole atlas level. Results may be queried and browsed at the PeptideAtlas web site. The raw data, search results, and full builds can also be downloaded for other uses.Link
PeptideAtlasPeptides identified in LC-MS/MS proteomics experimentsLink