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Author Details

Shuichi Kawashima
Database Center for Life Science, Joint Support-Center for Data Science Research
1999
49
24
PMIDPaper TitleJournal TitlePublished Year
36509753TogoVar: A comprehensive Japanese genetic variation database.Hum Genome Var2022
35801937TogoID: an exploratory ID converter to bridge biological datasets.Bioinformatics2022
34820659The Data Use Ontology to streamline responsible access to human biomedical datasets.Cell Genom2021
32308977BioHackathon 2015: Semantics of data for life sciences and reproducible research.F1000Res2020
33053895The <i>Lethal(2)-Essential-for-Life</i> [<i>L(2)EFL</i>] Gene Family Modulates Dengue Virus Infection in <i>Aedes aegypti</i>.Int J Mol Sci2020
30624651TogoGenome/TogoStanza: modularized Semantic Web genome database.Database (Oxford)2019
29460198Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus⿿ÿ⿿yedoensis 'Somei-yoshino' across the Japanese archipelago.J Plant Res2018
30068583Corrigendum: Interactive transcriptome analysis of malaria patients and infecting <i>Plasmodium falciparum</i>.Genome Res2018
30576482NBDC RDF portal: a comprehensive repository for semantic data in life sciences.Database (Oxford)2018
25973165Implementation of linked data in the life sciences at BioHackathon 2011.J Biomed Semantics2015
24495517BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.J Biomed Semantics2014
25385078PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list.J Bioinform Comput Biol2014
25091627Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum.Genome Res2014
23193276KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.Nucleic Acids Res2013
23398680The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.J Biomed Semantics2013
22951932Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation.mBio2012
21806842The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.J Biomed Semantics2011
20153838Characterization of alpha-phosphoglucomutase isozymes from Toxoplasma gondii.Parasitol Int2010
20727200The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.J Biomed Semantics2010
18987005Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009.Nucleic Acids Res2009
19443856Domain shuffling and the evolution of vertebrates.Genome Res2009
19462016Systems biology approaches and pathway tools for investigating cardiovascular disease.Mol Biosyst2009
18077471KEGG for linking genomes to life and the environment.Nucleic Acids Res2008
17998252AAindex: amino acid index database, progress report 2008.Nucleic Acids Res2008
17468225EGENES: transcriptome-based plant database of genes with metabolic pathway information and expressed sequence tag indices in KEGG.Plant Physiol2007
18546504Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes.Genome Inform2007
18546483New amino acid indices based on residue network topology.Genome Inform2007
17586824VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.Nucleic Acids Res2007
17370268Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis.Proteomics2007
17298663Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli.BMC Genomics2007
16381885From genomics to chemical genomics: new developments in KEGG.Nucleic Acids Res2006
17503368Metabolite antigens and pathway incompatibility.Genome Inform2006
16845049EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.Nucleic Acids Res2006
16882042Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic.Traffic2006
16381886ODB: a database of operons accumulating known operons across multiple genomes.Nucleic Acids Res2006
16362913Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.Genome Inform2005
16115921Alteration of gene expression in human hepatocellular carcinoma with integrated hepatitis B virus DNA.Clin Cancer Res2005
16362930Autoimmune diseases and peptide variations.Genome Inform2005
16362917Comprehensive analysis and prediction of synthetic lethality using subcellular locations.Genome Inform2005
14681412The KEGG resource for deciphering the genome.Nucleic Acids Res2004
11752249The KEGG databases at GenomeNet.Nucleic Acids Res2002
11752271Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags.Nucleic Acids Res2002
11493572Large-scale cDNA analysis of the maternal genetic information in the egg of Halocynthia roretzi for a gene expression catalog of ascidian development.Development2001
11802423[Prediction of protein interaction networks based on genome information].Tanpakushitsu Kakusan Koso2001
11858227Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium anabaena sp. strain PCC 7120.DNA Res2001
10592202MAGEST: MAboya gene expression patterns and sequence tags.Nucleic Acids Res2000
10592278AAindex: amino acid index database.Nucleic Acids Res2000
9847231AAindex: Amino Acid Index Database.Nucleic Acids Res1999
11072346Genome-scale Gene Expression Analysis and Pathway Reconstruction in KEGG.Genome Inform Ser Workshop Genome Inform1999
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Collaborators

Minoru Kanehisa
Co-authored papers 33
Toshiaki Katayama
Database Center for Life Science
Co-authored papers 20
Soichi Ogishima
Tohoku University Graduate School of Medicine
Co-authored papers 6
Takatomo Fujisawa
National Institute of Genetics
Co-authored papers 6
Yasunori Yamamoto
Database Center for Life Science, Joint Support-Center for Data Science Research
Co-authored papers 6
Kiyoko F Aoki-Kinoshita
Co-authored papers 5
Rutger A Vos
Naturalis Biodiversity Center
Co-authored papers 5
Mark D Wilkinson
Universidad Politecnica de Madrid (UPM)
Co-authored papers 5
Raoul J P Bonnal
National Institute for Molecular Genetics "Romeo ed Enrica Invernizzi"
Co-authored papers 5
Chisato Yamasaki
Osaka University
Co-authored papers 5
Jan Aerts
Co-authored papers 4
Pjotr Prins
Wageningen University & Research
Co-authored papers 4
Bruno Aranda
European Bioinformatics Institute
Co-authored papers 4
Christian M Zmasek
J. Craig Venter Institute
Co-authored papers 3
Keiichiro Ono
university of california san diego
Co-authored papers 3
Kozo Nishida
Japan Science and Technology Agency
Co-authored papers 3
Jerven Bolleman
carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4
Co-authored papers 3
Mizuki Morita
Okayama University
Co-authored papers 3
Hidemasa Bono
Hiroshima University
Co-authored papers 3
Erick Antezana
Norwegian University of Science and Technology
Co-authored papers 3
Martin Senger
DKFZ - German Cancer Research Center
Co-authored papers 2
Alberto Labarga
Co-authored papers 2
Jos?? M Fern??ndez
Hospital Universitario y Politecnico la Fe
Co-authored papers 2
Takuji Yamada
Tokyo Institute of Technology
Co-authored papers 2
Issaku Yamada
Co-authored papers 2
Minae Kawashima
Database Center for Life Science
Co-authored papers 2
René Ranzinger
Co-authored papers 2
Robert Hoehndorf
King Abdullah University of Science and Technology
Co-authored papers 2
William S York
Co-authored papers 2
Hiromasa Ono
Database Center for Life Science
Co-authored papers 2
Release 1.2