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Author Details

Chris Sander
Broad Institute of MIT and Harvard
1979
369
144
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38057668Dictionary of immune responses to cytokines at single-cell resolution.Nature2024
38057668Dictionary of immune responses to cytokines at single-cell resolution.Nature2024
36697832Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.Nature2023
37585474cyjShiny: A cytoscape.js R Shiny Widget for network visualization and analysis.PLoS One2023
37555633COVIDpro: Database for Mining Protein Dysregulation in Patients with COVID-19.J Proteome Res2023
37156936A deep learning algorithm to predict risk of pancreatic cancer from disease trajectories.Nat Med2023
37343696Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets.Mol Cell Proteomics2023
37214973Simultaneous enhancement of multiple functional properties using evolution-informed protein design.bioRxiv2023
36697832Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.Nature2023
37117188Pancreatic cancer is associated with medication changes prior to clinical diagnosis.Nat Commun2023
37555633COVIDpro: Database for Mining Protein Dysregulation in Patients with COVID-19.J Proteome Res2023
37585474cyjShiny: A cytoscape.js R Shiny Widget for network visualization and analysis.PLoS One2023
37156936A deep learning algorithm to predict risk of pancreatic cancer from disease trajectories.Nat Med2023
37214973Simultaneous enhancement of multiple functional properties using evolution-informed protein design.bioRxiv2023
37117188Pancreatic cancer is associated with medication changes prior to clinical diagnosis.Nat Commun2023
37343696Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets.Mol Cell Proteomics2023
34788843The reactome pathway knowledgebase 2022.Nucleic Acids Res2022
35385861FcγR-mediated SARS-CoV-2 infection of monocytes activates inflammation.Nature2022
36203550COVIDpro: Database for mining protein dysregulation in patients with COVID-19.bioRxiv2022
35412613Precision Combination Therapies Based on Recurrent Oncogenic Coalterations.Cancer Discov2022
34788843The reactome pathway knowledgebase 2022.Nucleic Acids Res2022
35412613Precision Combination Therapies Based on Recurrent Oncogenic Coalterations.Cancer Discov2022
35385861FcγR-mediated SARS-CoV-2 infection of monocytes activates inflammation.Nature2022
36203550COVIDpro: Database for mining protein dysregulation in patients with COVID-19.bioRxiv2022
33196823CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics.Nucleic Acids Res2021
35475239A pan-cancer survey of cell line tumor similarity by feature-weighted molecular profiles.Cell Rep Methods2021
33893299Protein design and variant prediction using autoregressive generative models.Nat Commun2021
33999203PredictProtein - Predicting Protein Structure and Function for 29 Years.Nucleic Acids Res2021
33835956Artificial Intelligence and Early Detection of Pancreatic Cancer: 2020 Summative Review.Pancreas2021
33373583CellBox: Interpretable Machine Learning for Perturbation Biology with Application to the Design of Cancer Combination Therapy.Cell Syst2021
33196823CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics.Nucleic Acids Res2021
34686201Molecular response to PARP1 inhibition in ovarian cancer cells as determined by mass spectrometry based proteomics.J Ovarian Res2021
34860157Author-sourced capture of pathway knowledge in computable form using Biofactoid.Elife2021
34401873SARS-CoV-2 infects blood monocytes to activate NLRP3 and AIM2 inflammasomes, pyroptosis and cytokine release.Res Sq2021
34664389COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34824367Pharmacologically controlling protein-protein interactions through epichaperomes for therapeutic vulnerability in cancer.Commun Biol2021
34710137Disulfiram use is associated with lower risk of COVID-19: A retrospective cohort study.PLoS One2021
34939300COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34877547Analyzing causal relationships in proteomic profiles using CausalPath.STAR Protoc2021
35475239A pan-cancer survey of cell line tumor similarity by feature-weighted molecular profiles.Cell Rep Methods2021
33893299Protein design and variant prediction using autoregressive generative models.Nat Commun2021
33835956Artificial Intelligence and Early Detection of Pancreatic Cancer: 2020 Summative Review.Pancreas2021
34860157Author-sourced capture of pathway knowledge in computable form using Biofactoid.Elife2021
34939300COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34877547Analyzing causal relationships in proteomic profiles using CausalPath.STAR Protoc2021
34824367Pharmacologically controlling protein-protein interactions through epichaperomes for therapeutic vulnerability in cancer.Commun Biol2021
34710137Disulfiram use is associated with lower risk of COVID-19: A retrospective cohort study.PLoS One2021
34401873SARS-CoV-2 infects blood monocytes to activate NLRP3 and AIM2 inflammasomes, pyroptosis and cytokine release.Res Sq2021
34664389COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34686201Molecular response to PARP1 inhibition in ovarian cancer cells as determined by mass spectrometry based proteomics.J Ovarian Res2021
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Collaborators

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Memorial Sloan Kettering Cancer Center
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Debora S Marks
Blavatnik Institute, Harvard Medical School
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Liisa Holm
Institute of Biotechnology, University of Helsinki
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Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
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Augustin Luna
Harvard Medical School
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Reinhard Schneider
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Co-authored papers 23
Peer Bork
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Technical University of Munich (TUM)
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Gary D Bader
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Ozgun Babur
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Nicholas D Socci
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Boris Reva
Icahn School of Medicine at Mount Sinai
Co-authored papers 12
James J Hsieh
Washington University
Co-authored papers 11
Agnes Viale
Memorial Sloan Kettering Cancer Center
Co-authored papers 11
Ethan Cerami
Dana-Farber Cancer Institute
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Jianjiong Gao
Memorial Sloan Kettering Cancer Center
Co-authored papers 10
Benjamin E Gross
Memorial Sloan Kettering Cancer Center
Co-authored papers 10
Ugur Dogrusoz
Bilkent University
Co-authored papers 9
Selcuk Onur Sumer
Co-authored papers 9
Erik Larsson
Co-authored papers 8
Timothy A Chan
Cleveland Clinic.
Co-authored papers 8
William Lee
Co-authored papers 8
Release 1.2