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Author Details

Stephan Fischer
Institut Pasteur, Universite Paris Cite
2012
21
9
PMIDPaper TitleJournal TitlePublished Year
36549922Learning single-cell chromatin accessibility profiles using meta-analytic marker genes.Brief Bioinform2023
37940702The transcriptional legacy of developmental stochasticity.Nat Commun2023
35106454Erratum: How many markers are needed to robustly determine a cell's type?iScience2022
35387429Implementation of Zebrafish Ontologies for Toxicology Screening.Front Toxicol2022
36271855Defining the extent of gene function using ROC curvature.Bioinformatics2022
35319013Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2022
33972801Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections.Nat Neurosci2021
34765918How many markers are needed to robustly determine a cell's type?iScience2021
34616066A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.Nature2021
34616062Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2021
34015329Single-cell co-expression analysis reveals that transcriptional modules are shared across cell types in the brain.Cell Syst2021
34238958BiPSim: a flexible and generic stochastic simulator for polymerization processes.Sci Rep2021
34234317Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor.Nat Protoc2021
34280183Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain.PLoS Biol2021
32271631The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities.Artif Life2020
31727682Copolymerization of single-cell nucleic acids into balls of acrylamide gel.Genome Res2020
31189086Automated generation of bacterial resource allocation models.Metab Eng2019
29169408The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes.J Biomed Semantics2017
25142746A model for genome size evolution.Bull Math Biol2014
24564457In silico experimental evolution: a tool to test evolutionary scenarios.BMC Bioinformatics2013
22245622Modeling erythroblastic islands: using a hybrid model to assess the function of central macrophage.J Theor Biol2012
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Collaborators

Jesse Gillis
Stanley Institute for Cognitive Genomics
Co-authored papers 13
Evan Z Macosko
Co-authored papers 3
Brian R Herb
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Aviv Regev
Broad Institute of MIT and Harvard
Co-authored papers 3
Eran A Mukamel
University of California San Diego
Co-authored papers 3
H??ctor Corrada Bravo
University of Maryland College Park, College Park
Co-authored papers 3
Peter V Kharchenko
Co-authored papers 3
Owen White
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 3
Seth A Ament
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Fangming Xie
University of California Los Angeles
Co-authored papers 3
Hongkui Zeng
Allen Institute for Brain Science
Co-authored papers 3
Jeff Goldy
Co-authored papers 3
Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 3
Zizhen Yao
Allen Institute for Brain Science
Co-authored papers 3
Joshua Orvis
Institute for Genome Sciences, University of Maryland School of Medicine
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Joseph R Nery
The Salk Institute for Biological Studies
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Anup Mahurkar
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Rongxin Fang
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 3
Ronna Hertzano
University of Maryland School of Medicine
Co-authored papers 3
Michael Hawrylycz
Allen Institute for Brain Science
Co-authored papers 3
Richard H Scheuermann
J. Craig Venter Institute
Co-authored papers 2
Kun Zhang
China Pharmaceutical University
Co-authored papers 2
Ed S Lein
Allen Institute for Brain Science
Co-authored papers 2
Brian D Aevermann
J. Craig Venter Institute
Co-authored papers 2
Christopher Dirk Keene
University of Washington
Co-authored papers 2
Alexander Dobin
Co-authored papers 2
Boudewijn P F Lelieveldt
Leiden University Medical Center
Co-authored papers 2
Song-Lin Ding
Allen Institute for Brain Science
Co-authored papers 2
Dinh Diep
Co-authored papers 2
Release 1.2