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Author Details

Mark A DePristo
2003
60
41
PMIDPaper TitleJournal TitlePublished Year
35190689Using deep learning to annotate the protein universe.Nat Biotechnol2022
34987224RNA profiles reveal signatures of future health and disease in pregnancy.Nature2022
34283192Challenges of Accuracy in Germline Clinical Sequencing Data.JAMA2021
31406327Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.Nat Biotechnol2019
30617335A guide to deep learning in healthcare.Nat Med2019
30916319GenomeWarp: an alignment-based variant coordinate transformation.2019
30864325CrowdVariant: a crowdsourcing approach to classify copy number variants.Pac Symp Biocomput2019
29360107Erratum: Sequence data and association statistics from 12,940 type 2 diabetes cases and controls.Sci Data2018
30247488A universal SNP and small-indel variant caller using deep neural networks.Nature Biotechnology2018
29648622Deep learning of genomic variation and regulatory network data.Hum Mol Genet2018
29279374Evaluating the contribution of rare variants to type 2 diabetes and related traits using pedigrees.Proc Natl Acad Sci U S A2018
27876817A framework for the detection of de novo mutations in family-based sequencing data.Eur J Hum Genet2017
28341696A Low-Frequency Inactivating <i>AKT2</i> Variant Enriched in the Finnish Population Is Associated With Fasting Insulin Levels and Type 2 Diabetes Risk.Diabetes2017
29257133Sequence data and association statistics from 12,940 type 2 diabetes cases and controls.Sci Data2017
27535533Analysis of protein-coding genetic variation in 60,706 humans.Nature2016
27398621The genetic architecture of type 2 diabetes.Nature2016
25487149Exome sequencing identifies rare LDLR and APOA5 alleles conferring risk for myocardial infarction.Nature2015
25086666A framework for the interpretation of de novo mutation in human disease.Nat Genet2014
24463508A polygenic burden of rare disruptive mutations in schizophrenia.Nature2014
24980144Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences.Genome Biol2014
24941081Loss-of-function mutations in APOC3, triglycerides, and coronary disease.N Engl J Med2014
23352160Rare complete knockouts in humans: population distribution and significant role in autism spectrum disorders.Neuron2013
25431634From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.Curr Protoc Bioinformatics2013
23593035Analysis of rare, exonic variation amongst subjects with autism spectrum disorders and population controls.PLoS Genet2013
23128226An integrated map of genetic variation from 1,092 human genomes.Nature2012
22807667Efficiency and power as a function of sequence coverage, SNP array density, and imputation.PLoS Comput Biol2012
22344438A systematic survey of loss-of-function variants in human protein-coding genes.Science2012
22495311Patterns and rates of exonic de novo mutations in autism spectrum disorders.Nature2012
22863213Pacific biosciences sequencing technology for genotyping and variation discovery in human data.BMC Genomics2012
21775993Comparing strategies to fine-map the association of common SNPs at chromosome 9p21 with type 2 diabetes and myocardial infarction.Nat Genet2011
21478889A framework for variation discovery and genotyping using next-generation DNA sequencing data.Nat Genet2011
21212097Exome sequencing reveals a novel mutation for autosomal recessive non-syndromic mental retardation in the TECR gene on chromosome 19p13.Hum Mol Genet2011
21244689Next-generation sequencing for HLA typing of class I loci.BMC Genomics2011
21803805ContEst: estimating cross-contamination of human samples in next-generation sequencing data.Bioinformatics2011
21917140The functional spectrum of low-frequency coding variation.Genome Biol2011
21666693Variation in genome-wide mutation rates within and between human families.Nat Genet2011
21653522The variant call format and VCFtools.Bioinformatics2011
20644199The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.Genome Res2010
20942659Exome sequencing, ANGPTL3 mutations, and familial combined hypolipidemia.N Engl J Med2010
20427419Low-complexity regions in Plasmodium falciparum: missing links in the evolution of an extreme genome.Mol Biol Evol2010
20159551Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis.Molecular Cell2010
19602543Temporal constraints on the incorporation of regulatory mutants in evolutionary pathways.Molecular Biology and Evolution2009
19628003Introducing simulated cellular architecture to the quantitative analysis of fluorescent microscopy.Progress in Biophysics and Molecular Biology2009
17556755Mutational reversions during adaptive protein evolution.Molecular Biology and Evolution2007
19404414The subtle benefits of being promiscuous: adaptive evolution potentiated by enzyme promiscuity.2007
16518382Is one solution good enough?Nat Struct Mol Biol2006
16766188The RNA degradosome: life in the fast lane of adaptive molecular evolution.Trends in Biochemical Sciences2006
16806741On the abundance, amino acid composition, and evolutionary dynamics of low-complexity regions in proteins.Gene2006
16905105Knowledge-based real-space explorations for low-resolution structure determination.Structure2006
16601193Darwinian evolution can follow only very few mutational paths to fitter proteins.Science2006
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Massachusetts General Hospital
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Heartand Lung Research Institute, University of Cambridge
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Stanford University School of Medicine
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Baylor College of Medicine
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