Author details

Full Name

Peter R Weigele

Affiliation

New England Biolabs Inc.

ORCID

Career Start Year

1998

Papers

H Index

Expertise

CM4AI Collaborator

Gloria M Sheynkman (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37089567	Complete genome assembly and methylome dissection of <i>Methanococcus aeolicus</i> PL15/H <i><sup>p</sup></i>.	Front Microbiol	2023
37668405	Diverse Durham collection phages demonstrate complex BREX defense responses.	Appl Environ Microbiol	2023
37572349	Four additional natural 7-deazaguanine derivatives in phages and how to make them.	Nucleic Acids Res	2023
34522950	Pathways of thymidine hypermodification.	Nucleic Acids Res	2022
35388146	Characterization of Cme and Yme thermostable Cas12a orthologs.	Commun Biol	2022
36245800	Carbamoyltransferase Enzyme Assay: <i>In vitro</i> Modification of 5-hydroxymethylcytosine (5hmC) to 5-carbamoyloxymethylcytosine (5cmC).	Bio Protoc	2022
35961013	A roadmap for the functional annotation of protein families: a community perspective.	Database (Oxford)	2022
32822022	Detection of Modified Bases in Bacteriophage Genomic DNA.	Methods Mol Biol	2021
33561243	Genome analysis of Salmonella enterica serovar Typhimurium bacteriophage L, indicator for StySA (StyLT2III) restriction-modification system action.	G3 (Bethesda)	2021
34910575	Hypermodified DNA in Viruses of E. coli and Salmonella.	EcoSal Plus	2021
34747693	A genome-phenome association study in native microbiomes identifies a mechanism for cytosine modification in DNA and RNA.	Elife	2021
34276622	Characterization of BisI Homologs.	Front Microbiol	2021
34155108	Phage-encoded ten-eleven translocation dioxygenase (TET) is active in C5-cytosine hypermodification in DNA.	Proc Natl Acad Sci U S A	2021
34033748	A new family of globally distributed lytic roseophages with unusual deoxythymidine to deoxyuridine substitution.	Curr Biol	2021
33193286	<i>In vitro</i> Type II Restriction of Bacteriophage DNA With Modified Pyrimidines.	Front Microbiol	2020
30571101	Insights into the Biochemistry, Evolution, and Biotechnological Applications of the Ten-Eleven Translocation (TET) Enzymes.	Biochemistry	2019
31784519	7-Deazaguanine modifications protect phage DNA from host restriction systems.	Nat Commun	2019
31511377	Deoxyinosine and 7-Deaza-2-Deoxyguanosine as Carriers of Genetic Information in the DNA of <i>Campylobacter</i> Viruses.	J Virol	2019
30984133	Type II Restriction of Bacteriophage DNA With 5hmdU-Derived Base Modifications.	Front Microbiol	2019
29555775	Identification and biosynthesis of thymidine hypermodifications in the genomic DNA of widespread bacterial viruses.	Proc Natl Acad Sci U S A	2018
27319741	Biosynthesis and Function of Modified Bases in Bacteria and Their Viruses.	Chem Rev	2016
26578595	Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA.	Nucleic Acids Res	2016
22609660	A terracotta bio-battery.	Bioresour Technol	2012
22879595	Unraveling the role of the C-terminal helix turn helix of the coat-binding domain of bacteriophage P22 scaffolding protein.	J Biol Chem	2012
21974803	Decoding bacteriophage P22 assembly: identification of two charged residues in scaffolding protein responsible for coat protein interaction.	Virology	2011
20662890	Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments.	Environ Microbiol	2010
20709082	Visualizing the structural changes of bacteriophage Epsilon15 and its Salmonella host during infection.	J Mol Biol	2010
20956333	Engineering of a synthetic electron conduit in living cells.	Proc Natl Acad Sci U S A	2010
20448647	Photocatalysts: splitting water with viruses.	Nat Nanotechnol	2010
19432536	Conditional graphical models for protein structural motif recognition.	J Comput Biol	2009
18305544	Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy.	Nature	2008
18480256	Direct and selective elimination of specific prions and amyloids by 4,5-dianilinophthalimide and analogs.	Proc Natl Acad Sci U S A	2008
17383677	Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: a "horned" bacteriophage of marine synechococcus.	J Mol Biol	2007
17564603	Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus.	Environ Microbiol	2007
16597248	Protein fold recognition using segmentation conditional random fields (SCRFs).	J Comput Biol	2006
16730179	Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery.	Structure	2006
16452981	Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus.	Nature	2006
15843016	Molecular genetics of bacteriophage P22 scaffolding protein's functional domains.	J Mol Biol	2005
16289113	Stalled folding mutants in the triple beta-helix domain of the phage P22 tailspike adhesin.	J Mol Biol	2005
15828858	Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations.	PLoS Biol	2005
15388848	Efficient reversal of Alzheimer's disease fibril formation and elimination of neurotoxicity by a small molecule.	Proc Natl Acad Sci U S A	2004
12837775	Homotrimeric, beta-stranded viral adhesins and tail proteins.	J Bacteriol	2003
10764583	Structure of the coat protein-binding domain of the scaffolding protein from a double-stranded DNA virus.	J Mol Biol	2000
9680477	A helical coat protein recognition domain of the bacteriophage P22 scaffolding protein.	J Mol Biol	1998

1 - 44 of 44

Joshua M A Stough

University of Michigan ann arbor

Career Start Year 2016

Number of shared co-authors 0

Adair L Borges

Innovative Genomics Institute, University of California berkeley

Career Start Year 2014

Number of shared co-authors 1

Jolene Ramsey

Center for Phage Technology, Texas A&M University, College Station

Career Start Year 2013

Number of shared co-authors 9

Jeroen Wagemans

Leuven Plant Institute

Career Start Year 2013

Number of shared co-authors 2

Alexander Maxwell Burroughs

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 2005

Number of shared co-authors 1

Arkadiusz W Kulczyk

Institute for Quantitative Biomedicine, Rutgers University

Career Start Year 2004

Number of shared co-authors 2

Ivan Erill

University of Maryland

Career Start Year 2002

Number of shared co-authors 3

Cynthia Andrews-Pfannkoch

Mayo Clinic

Career Start Year 2000

Number of shared co-authors 2

Jo??o C Setubal

Chemistry Institute, Universidade de Sao Paulo - USP

Career Start Year 2000

Number of shared co-authors 4

Marc C Morais

University of Texas Medical Branch

Career Start Year 2000

Number of shared co-authors 0

Karen Moore

University of Exeter

Career Start Year 2000

Number of shared co-authors 2

Thomas Junier

Institute of Biology, University of Neuchatel

Career Start Year 1998

Number of shared co-authors 0

Stephen A McMahon

University of St Andrews

Career Start Year 1998

Number of shared co-authors 0

Jonathan H Badger

Center for Cancer Research, National Cancer Institute, National Institutes of Health

Career Start Year 1997

Number of shared co-authors 1

Arcady Mushegian

National Science Foundation

Career Start Year 1991

Number of shared co-authors 0

Terje Dokland

The University of Alabama at Birmingham

Career Start Year 1990

Number of shared co-authors 1

Seth A Darst

The Rockefeller University

Career Start Year 1988

Number of shared co-authors 0

Jennifer A Doudna

Innovative Genomics Institute, University of California berkeley

Career Start Year 1987

Number of shared co-authors 1

Arun Malhotra

University of Miami Miller School of Medicine

Career Start Year 1986

Number of shared co-authors 0

Steven A Benner

Foundation for Applied Molecular Evolution

Career Start Year 1980

Number of shared co-authors 2

Alan R Davidson

University of Toronto, University Avenue

Career Start Year 1980

Number of shared co-authors 0

George M Weinstock

The Genome Center at Washington University, Washington University School of Medicine

Career Start Year 1979

Number of shared co-authors 5

Andrzej Joachimiak

Center for Structural Biology of Infectious Diseases, University of Chicago

Career Start Year 1979

Number of shared co-authors 8

Alexander E Gorbalenya

Leiden University Medical Center

Career Start Year 1977

Number of shared co-authors 0

Gail E Christie

Virginia Commonwealth University

Career Start Year 1977

Number of shared co-authors 0

Stephen C Harvey

University of Pennsylvania

Career Start Year 1972

Number of shared co-authors 1

Erica Sodergren

The Genome Institute at Washington University

Career Start Year 1972

Number of shared co-authors 1

Bart Barrell

Wellcome Trust Sanger Institute

Career Start Year 1965

Number of shared co-authors 4

Hamilton O Smith

J. Craig Venter Institute

Career Start Year 1964

Number of shared co-authors 5

Michael G Rossmann

Purdue University

Career Start Year 1960

Number of shared co-authors 6

row(s) 1 - 30 of 30

Geoffrey Hutinet

University of Florida

Co-authored papers 5

Wah Chiu

Stanford University

Co-authored papers 5

Val??rie de Cr??cy-Lagard

University of Florida

Co-authored papers 5

Lana Saleh

The Pennsylvania State University, University Park

Co-authored papers 4

Wen Jiang

Purdue University. Electronic address: .

Co-authored papers 4

Graham F Hatfull

University of Pittsburgh

Co-authored papers 4

Katherine H O'Toole

Boston University

Co-authored papers 2

Mark Gorelik

University of Florida

Co-authored papers 1

Antoine Danchin

University of Hong Kong

Co-authored papers 1

Paul Monaghan

University of Florida

Co-authored papers 1

Lucy J Colwell

Google Research

Co-authored papers 1

Alan Bridge

carnegie mellon university

Co-authored papers 1

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Co-authored papers 1

Erica Watson Carter

University of Florida Citrus Research and Education Center

Co-authored papers 1

David Vallenet

Institut Francois Jacob, CNRS, Universite d'Evry, Universite Paris-Saclay

Co-authored papers 1

Richard J Roberts

Co-authored papers 1

Liudmyla Kondratova

Genetics Institute, University of Florida

Co-authored papers 1

Stacey Cleveland

University of Florida

Co-authored papers 1

Luke R Thompson

Northern Gulf Institute, Mississippi State University

Co-authored papers 1

Cecilia N Arighi

University of Delaware

Co-authored papers 1

Adam M Deutschbauer

Lawrence Berkeley National Laboratory

Co-authored papers 1

Peter Uetz

Center for the Study of Biological Complexity, Virginia Commonwealth University

Co-authored papers 1

Lars Hestbjerg Hansen

Co-authored papers 1

Iddo Friedberg

Iowa State University

Co-authored papers 1

Irina A Rodionova

University of California at San Diego

Co-authored papers 1

Valerie Wood

University of Cambridge

Co-authored papers 1

Peter D Karp

Pangea Systems Inc., USA and Marine Biological Laboratory

Co-authored papers 1

Matthew L Baker

McGovern Medical School at the University of Texas Health Science Center

Co-authored papers 1

Marshall Jaroch

University of Florida

Co-authored papers 1

David A Sarracino

Harvard Partners Center For Genetics and Genomics

Co-authored papers 1

1 - 30

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