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Author Details

Len A Pennacchio
Lawrence Berkeley National Laboratory
1995
191
81
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36620995Single cell evaluation of endocardial Hand2 gene regulatory networks reveals HAND2-dependent pathways that impact cardiac morphogenesis.Development2023
37968388Single-cell, whole-embryo phenotyping of mammalian developmental disorders.Nature2023
37081156Topologically associating domain boundaries are required for normal genome function.Commun Biol2023
37080198Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range.Curr Biol2023
37386251Noncoding variants alter GATA2 expression in rhombomere 4 motor neurons and cause dominant hereditary congenital facial paresis.Nat Genet2023
36620995Single cell evaluation of endocardial Hand2 gene regulatory networks reveals HAND2-dependent pathways that impact cardiac morphogenesis.Development2023
37425964Cell Type- and Tissue-specific Enhancers in Craniofacial Development.bioRxiv2023
37425940Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis.bioRxiv2023
37968388Single-cell, whole-embryo phenotyping of mammalian developmental disorders.Nature2023
37425964Cell Type- and Tissue-specific Enhancers in Craniofacial Development.bioRxiv2023
37425940Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis.bioRxiv2023
37386251Noncoding variants alter GATA2 expression in rhombomere 4 motor neurons and cause dominant hereditary congenital facial paresis.Nat Genet2023
37081156Topologically associating domain boundaries are required for normal genome function.Commun Biol2023
37080198Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range.Curr Biol2023
34764456Perfect and imperfect views of ultraconserved sequences.Nat Rev Genet2022
35649376Differential Etv2 threshold requirement for endothelial and erythropoietic development.Cell Rep2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
34913122Characterization of Mammalian In Vivo Enhancers Using Mouse Transgenesis and CRISPR Genome Editing.Methods Mol Biol2022
34764456Perfect and imperfect views of ultraconserved sequences.Nat Rev Genet2022
35649376Differential Etv2 threshold requirement for endothelial and erythropoietic development.Cell Rep2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
34913122Characterization of Mammalian In Vivo Enhancers Using Mouse Transgenesis and CRISPR Genome Editing.Methods Mol Biol2022
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
33910599Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice.Genome Med2021
34290235Reactivation of a developmentally silenced embryonic globin gene.Nat Commun2021
33782603Ultraconserved enhancer function does not require perfect sequence conservation.Nat Genet2021
34256850Coding and noncoding variants in EBF3 are involved in HADDS and simplex autism.Hum Genomics2021
33757801HAND transcription factors cooperatively specify the aorta and pulmonary trunk.Dev Biol2021
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
34795375Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.Commun Biol2021
33910599Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice.Genome Med2021
33757801HAND transcription factors cooperatively specify the aorta and pulmonary trunk.Dev Biol2021
33782603Ultraconserved enhancer function does not require perfect sequence conservation.Nat Genet2021
34795375Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.Commun Biol2021
34290235Reactivation of a developmentally silenced embryonic globin gene.Nat Commun2021
34256850Coding and noncoding variants in EBF3 are involved in HADDS and simplex autism.Hum Genomics2021
32169219Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants.Cell2020
32380032Presynaptic Homeostasis Opposes Disease Progression in Mouse Models of ALS-Like Degeneration: Evidence for Homeostatic Neuroprotection.Neuron2020
32169219Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants.Cell2020
33044128ATAC-Seq Reveals an <i>Isl1</i> Enhancer That Regulates Sinoatrial Node Development and Function.Circ Res2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
32737473Supervised enhancer prediction with epigenetic pattern recognition and targeted validation.Nat Methods2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
32728245The changing mouse embryo transcriptome at whole tissue and single-cell resolution.Nature2020
32728242Spatiotemporal DNA methylome dynamics of the developing mouse fetus.Nature2020
33044128ATAC-Seq Reveals an <i>Isl1</i> Enhancer That Regulates Sinoatrial Node Development and Function.Circ Res2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
32737473Supervised enhancer prediction with epigenetic pattern recognition and targeted validation.Nat Methods2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
32728245The changing mouse embryo transcriptome at whole tissue and single-cell resolution.Nature2020
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Collaborators

Axel Visel
Co-authored papers 67
Edward M Rubin
Co-authored papers 41
Veena Afzal
Co-authored papers 37
Diane E Dickel
Co-authored papers 36
Jennifer A Akiyama
Co-authored papers 35
Ingrid Plajzer-Frick
Co-authored papers 27
Yiwen Zhu
Lawrence Berkeley National Laboratory
Co-authored papers 16
Wendy Schackwitz
Co-authored papers 16
Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 16
Cliff Han
Los Alamos National Laboratory
Co-authored papers 14
Richard M Myers
HudsonAlpha Institute for Biotechnology
Co-authored papers 14
Alex S Nord
UC Davis Center for Neuroscience.
Co-authored papers 14
Tanja Woyke
Co-authored papers 14
Miriam Land
Oak Ridge National Laboratory
Co-authored papers 13
Brandon J Mannion
Co-authored papers 12
Joel Martin
Co-authored papers 11
Iros Barozzi
Co-authored papers 11
Momoe Kato
Co-authored papers 11
Brian L Black
Cardiovascular Research Institute, University of California san francisco
Co-authored papers 10
David U Gorkin
Center for Epigenomics, University of California San Diego
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Nadav Ahituv
University of California san francisco
Co-authored papers 9
John L R Rubenstein
UCSF Medical School
Co-authored papers 9
Tyler H Garvin
Co-authored papers 9
Anne N Harrington
Co-authored papers 9
Elizabeth A Lee
Co-authored papers 8
Quan T Pham
Co-authored papers 8
Ruth McPherson
Co-authored papers 8
Yoko Fukuda
Co-authored papers 8
Inna Dubchak
Lawrence Berkeley National Laboratory
Co-authored papers 7
Yupeng He
Salk Institute for Biological Studies
Co-authored papers 6
Release 1.2