Skip to Main Content

Author Details

Jeffrey M Granja
Stanford University School of Medicine
2017
23
18
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34285077Dynamic chromatin regulatory landscape of human CAR T cell exhaustion.Proc Natl Acad Sci U S A2021
33790476Author Correction: ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis.Nat Genet2021
33633365ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis.Nat Genet2021
34819668ecDNA hubs drive cooperative intermolecular oncogene expression.Nature2021
34016988High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer.Nat Commun2021
34341533LKB1 inactivation modulates chromatin accessibility to drive metastatic progression.Nat Cell Biol2021
32966789Chromatin Landscape Underpinning Human Dendritic Cell Heterogeneity.Cell Rep2020
33106633Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer's and Parkinson's diseases.Nat Genet2020
33203843Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis.Nat Commun2020
33318485Author Correction: Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis.Nat Commun2020
30315781Enhancer Connectome Nominates Target Genes of Inherited Risk Variants from Inflammatory Skin Disorders.J Invest Dermatol2019
31672989GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.Nat Commun2019
31802004c-Jun overexpression in CAR T cells induces exhaustion resistance.Nature2019
31359002Clonal replacement of tumor-specific T cells following PD-1 blockade.Nat Med2019
31406377An Nfil3-Zeb2-Id2 pathway imposes Irf8 enhancer switching during cDC1 development.Nat Immunol2019
31406378Cryptic activation of an Irf8 enhancer governs cDC1 fate specification.Nat Immunol2019
31375813Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion.Nat Biotechnol2019
31133759HiChIRP reveals RNA-associated chromosome conformation.Nat Methods2019
29686426Transcript-indexed ATAC-seq for precision immune profiling.Nat Med2018
30228179Intertumoral Heterogeneity in SCLC Is Influenced by the Cell Type of Origin.Cancer Discov2018
30361341The chromatin accessibility landscape of primary human cancers.Science2018
28584100Entropy in molecular recognition by proteins.Proc Natl Acad Sci U S A2017
28945252Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements.Nat Genet2017
  • 1 - 23 of 23

Recommended Authors

Yunjiang Qiu
Ludwig Institute for Cancer Research, University of California
Career Start Year 2015
Number of shared co-authors 1
Andr?? F Rendeiro
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Career Start Year 2014
Number of shared co-authors 1
Yong Chen
Rowan University
Career Start Year 2013
Number of shared co-authors 0
Paul Guilhamon
The Hospital for Sick Children
Career Start Year 2013
Number of shared co-authors 0
Galip G??rkan Yard??mc??
University of Washington
Career Start Year 2012
Number of shared co-authors 2
Kai Zhang
University of California
Career Start Year 2011
Number of shared co-authors 1
Jeremy M Simon
University of North Carolina
Career Start Year 2010
Number of shared co-authors 2
Andrew Adey
Knight Cancer Institute, Oregon Health and Science University
Career Start Year 2010
Number of shared co-authors 0
Alex P Reynolds
Altius Institute for Biomedical Sciences
Career Start Year 2009
Number of shared co-authors 2
David U Gorkin
Center for Epigenomics, University of California San Diego
Career Start Year 2009
Number of shared co-authors 1
Chongzhi Zang
Center for Public Health Genomics, University of Virginia
Career Start Year 2008
Number of shared co-authors 2
Songjoon Baek
Center for Cancer Research, National Cancer Institute
Career Start Year 2006
Number of shared co-authors 2
Christian Schmidl
Leibniz Institute for Immunotherapy
Career Start Year 2006
Number of shared co-authors 1
Altuna Akalin
Berlin Institute for Medical Systems Biology
Career Start Year 2006
Number of shared co-authors 0
Christoph Bock
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Career Start Year 2005
Number of shared co-authors 5
Richard Sandstrom
Altius Institute for Biomedical Sciences
Career Start Year 2005
Number of shared co-authors 3
Shyam Prabhakar
Genome Institute of Singapore (GIS)
Career Start Year 2004
Number of shared co-authors 1
Gary C Hon
Cecil H. and Ida Green Center for Reproductive Biology Sciences
Career Start Year 2004
Number of shared co-authors 3
Lingyun Song
Center for Genomic & Computational Biology, Duke University
Career Start Year 2004
Number of shared co-authors 2
Alexias Safi
Center for Genomic and Computational Biology, Duke University Medical Center
Career Start Year 2003
Number of shared co-authors 1
Mathieu Lupien
Princess Margaret Cancer Research Centre
Career Start Year 2003
Number of shared co-authors 0
Ting Wang
Washington University School of Medicine
Career Start Year 2001
Number of shared co-authors 3
Stefan Bekiranov
University of Virginia
Career Start Year 2000
Number of shared co-authors 1
Guo-Cheng Yuan
Dana-Farber Cancer Institute, Harvard School of Public Health
Career Start Year 2000
Number of shared co-authors 1
Sven Heinz
U.C. San Diego School of Medicine
Career Start Year 2000
Number of shared co-authors 0
Kai Tan
University of Pennsylvania
Career Start Year 1999
Number of shared co-authors 0
Gregory E Crawford
Center for Genomic & Computational Biology, Duke University
Career Start Year 1999
Number of shared co-authors 4
Martin Hirst
University of British Columbia
Career Start Year 1998
Number of shared co-authors 5
Bing Ren
Center for Epigenomics, University of California San Diego
Career Start Year 1995
Number of shared co-authors 5
Bradley E Bernstein
Broad Institute of MIT and Harvard
Career Start Year 1994
Number of shared co-authors 7

Collaborators

Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 19
Ansuman T Satpathy
Stanford University
Co-authored papers 15
William J Greenleaf
Stanford University
Co-authored papers 12
M Ryan Corces
Gladstone Institute of Neurological Disease
Co-authored papers 10
Maxwell R Mumbach
Broad Institute of MIT and Harvard
Co-authored papers 9
Anshul Kundaje
Stanford University.
Co-authored papers 3
Bryan H Louie
University of California San Diego
Co-authored papers 3
Shadi Shams
Rowan University School of Osteopathic Medicine
Co-authored papers 3
Peyton G Greenside
Co-authored papers 2
Ryan A Flynn
Boston Children's Hospital
Co-authored papers 2
Christina Curtis
Stanford University School of Medicine
Co-authored papers 2
Kun Qu
University of Science and Technology of China
Co-authored papers 2
Seung Woo Cho
Center for Genomic Integrity, Institute for Basic Science
Co-authored papers 2
Mark M Davis
Co-authored papers 2
Monte M Winslow
Stanford University School of Medicine
Co-authored papers 2
Timothy R D J Radstake
Co-authored papers 1
Jane Worthington
Co-authored papers 1
Anton G Henssen
Co-authored papers 1
Matthew A Brown
Co-authored papers 1
Mauro A A Castro
Federal University of Parana
Co-authored papers 1
Jose A Seoane
Universidade da Coruna
Co-authored papers 1
Jens Luebeck
University of California San Diego
Co-authored papers 1
Jean Claude Zenklusen
National Cancer Institute
Co-authored papers 1
Maureen D Mayes
University of Texas McGovern Medical School
Co-authored papers 1
Wanding Zhou
University of Pennsylvania
Co-authored papers 1
Paul G Giresi
Center for Personal Dynamic Regulomes
Co-authored papers 1
Michelle Monje
Co-authored papers 1
Christina S Kong
Stanford University School of Medicine
Co-authored papers 1
Thomas J Montine
Stanford University
Co-authored papers 1
Vineet Bafna
University of California San Diego
Co-authored papers 1
Release 1.2