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Author Details

Dongsup Kim
Korea Advanced Institute of Science and Technology
2003
101
29
PMIDPaper TitleJournal TitlePublished Year
36818727G-RANK: an equivariant graph neural network for the scoring of protein-protein docking models.Bioinform Adv2023
33753533Rising of <i>LOXHD1</i> as a signature causative gene of down-sloping hearing loss in people in their teens and 20s.J Med Genet2022
35640981DeepLUCIA: predicting tissue-specific chromatin loops using Deep Learning-based Universal Chromatin Interaction Annotator.Bioinformatics2022
36316405Prediction of drug-target interactions through multi-task learning.Sci Rep2022
34580383An enhanced variant effect predictor based on a deep generative model and the Born-Again Networks.Sci Rep2021
33831016Development of a graph convolutional neural network model for efficient prediction of protein-ligand binding affinities.PLoS One2021
35224297Brain physiome: A concept bridging <i>in vitro</i> 3D brain models and <i>in silico</i> models for predicting drug toxicity in the brain.Bioact Mater2021
31432077CRDS: Consensus Reverse Docking System for target fishing.Bioinformatics2020
31746978Prediction of mutation effects using a deep temporal convolutional network.Bioinformatics2020
33328504Autonomous molecule generation using reinforcement learning and docking to develop potential novel inhibitors.Sci Rep2020
30670620Engineering Clostridial Aldehyde/Alcohol Dehydrogenase for Selective Butanol Production.mBio2019
31703452In-Silico Molecular Binding Prediction for Human Drug Targets Using Deep Neural Multi-Task Learning.Genes (Basel)2019
31501517A compendium of promoter-centered long-range chromatin interactions in the human genome.Nat Genet2019
31610624Optimization of a microarray for fission yeast.Genomics Inform2019
31315049Global Analysis of Intercellular Homeodomain Protein Transfer.Cell Rep2019
31070725FP2VEC: a new molecular featurizer for learning molecular properties.Bioinformatics2019
30773278Hypomorphic Mutations in TONSL Cause SPONASTRIME Dysplasia.Am J Hum Genet2019
31026297Prediction of binding property of RNA-binding proteins using multi-sized filters and multi-modal deep convolutional neural network.PLoS One2019
291066133DIV: A 3D-genome Interaction Viewer and database.Nucleic Acids Res2018
30304922Mutation Analysis of Synthetic DNA Barcodes in a Fission Yeast Gene Deletion Library by Sanger Sequencing.Genomics Inform2018
29633047KRDS: a web server for evaluating drug resistance mutations in kinases by molecular docking.J Cheminform2018
29546878Inflammation induces two types of inflammatory dendritic cells in inflamed lymph nodes.Exp Mol Med2018
29654313Publisher Correction: Inflammation induces two types of inflammatory dendritic cells in inflamed lymph nodes.Exp Mol Med2018
28043061FARS2 mutation and epilepsy: Possible link with early-onset epileptic encephalopathy.Epilepsy Res2017
29281985Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction.BMC Bioinformatics2017
29297315Utilizing random Forest QSAR models with optimized parameters for target identification and its application to target-fishing server.BMC Bioinformatics2017
28977568Computational characterization of chromatin domain boundary-associated genomic elements.Nucleic Acids Res2017
28059162A late-lineage murine neutrophil precursor population exhibits dynamic changes during demand-adapted granulopoiesis.Sci Rep2017
26826717Library of binding protein scaffolds (LibBP): a computational platform for selection of binding protein scaffolds.Bioinformatics2016
26518137Interaction between bound water molecules and local protein structures: A statistical analysis of the hydrogen bond structures around bound water molecules.Proteins2016
27535358Inferring Crohn's disease association from exome sequences by integrating biological knowledge.BMC Med Genomics2016
27236923BGN Mutations in X-Linked Spondyloepimetaphyseal Dysplasia.Am J Hum Genet2016
27186904Using reverse docking for target identification and its applications for drug discovery.Expert Opin Drug Discov2016
26911566Structure-based Markov random field model for representing evolutionary constraints on functional sites.BMC Bioinformatics2016
25668204Downsloping high-frequency hearing loss due to inner ear tricellular tight junction disruption by a novel ILDR1 mutation in the Ig-like domain.PLoS One2015
26602082Global mapping of the regulatory interactions of histone residues.FEBS Lett2015
26717152Identifying and Reducing Systematic Errors in Chromosome Conformation Capture Data.PLoS One2015
26242193Identification and Clinical Implications of Novel MYO15A Mutations in a Non-consanguineous Korean Family by Targeted Exome Sequencing.Mol Cells2015
24682171A high-affinity protein binder that blocks the IL-6/STAT3 signaling pathway effectively suppresses non-small cell lung cancer.Mol Ther2014
25150109Systematic targeted gene deletion using the gene-synthesis method in fission yeast.J Microbiol Methods2014
24849801Dissecting the critical factors for thermodynamic stability of modular proteins using molecular modeling approach.PLoS One2014
24925643Soluble expression of human glycoprotein Ibα in Escherichia coli through replacement of the N-terminal capping domain.Protein Expr Purif2014
24526180A novel mutation of TMPRSS3 related to milder auditory phenotype in Korean postlingual deafness: a possible future implication for a personalized auditory rehabilitation.J Mol Med (Berl)2014
23076972Destabilization and mislocalization of POU3F4 by C-terminal frameshift truncation and extension mutation.Hum Mutat2013
24555875Interaction network among functional drug groups.BMC Syst Biol2013
24138854Physical origin of the contact frequency in chromosome conformation capture data.Biophys J2013
23764396Construction of the first compendium of chemical-genetic profiles in the fission yeast Schizosaccharomyces pombe and comparative compendium approach.Biochem Biophys Res Commun2013
23408895Genetic landscape of open chromatin in yeast.PLoS Genet2013
23266811LinkNMF: identification of histone modification modules in the human genome using nonnegative matrix factorization.Gene2013
23368702FitSearch: a robust way to interpret a yeast fitness profile in terms of drug's mode-of-action.BMC Genomics2013
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Collaborators

Inkyung Jung
Co-authored papers 12
Dong Uk Kim
Biomedical Research Institute, Pusan National University Hospital
Co-authored papers 7
Kwang-Lae Hoe
Chungnam National University
Co-authored papers 7
Woong-Yang Park
Samsung Genome Institute, Samsung Medical Center
Co-authored papers 7
Dong Xu
University of Missouri
Co-authored papers 4
Ying Xu
Oak Ridge National Laboratory
Co-authored papers 4
Nayoung K D Kim
Samsung Genome Institute, Samsung Medical Center
Co-authored papers 3
Han-Oh Park
Seoul National University
Co-authored papers 3
Doheon Lee
Korea Advanced Institute of Science and Technology
Co-authored papers 3
Manesh Shah
University of Tennessee Knoxville
Co-authored papers 2
Jinbo Xu
Toyota Technological Institute at Chicago
Co-authored papers 2
Gen Nishimura
Co-authored papers 2
Kyle Ellrott
Oregon Health & Science University
Co-authored papers 2
Jong-Il Kim
Genomic Medicine Institute, Medical Research Center, Seoul National University
Co-authored papers 2
Jun-Tao Guo
University of North Carolina at Charlotte
Co-authored papers 2
Jacqueline Hayles
The Francis Crick Institute
Co-authored papers 1
Valerie Wood
University of Cambridge
Co-authored papers 1
Philip F LoCascio
University of Oxford
Co-authored papers 1
Eliezer Masliah
National Institute On Aging
Co-authored papers 1
Samantha Kuan
University of California San Diego
Co-authored papers 1
Yarui Diao
Duke University Medical Center
Co-authored papers 1
Eric J Huang
University of California san francisco
Co-authored papers 1
Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 1
Sergei Passovets
Co-authored papers 1
Soo-Young Lee
Co-authored papers 1
Inna Vokler
Co-authored papers 1
Kiyoung Lee
Samsung Advanced Institute of Technology (SAIT), Samsung Electronics Co. Ltd.
Co-authored papers 1
Anthony D Schmitt
Co-authored papers 1
Hae-Joon Park
University of Colorado Anschutz Medical Campus
Co-authored papers 1
Seth Blackshaw
Johns Hopkins University School of Medicine.
Co-authored papers 1
Release 1.2