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Author Details

Trisha N Davis
University of Washington
1982
132
47
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36629399Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline.J Proteome Res2023
37305927BRCA1/BARD1 intrinsically disordered regions facilitate chromatin recruitment and ubiquitylation.EMBO J2023
36651597DASH/Dam1 complex mutants stabilize ploidy in histone-humanized yeast by weakening kinetochore-microtubule attachments.EMBO J2023
35173049Kinesin-14 motors participate in a force balance at microtubule plus-ends to regulate dynamic instability.Proc Natl Acad Sci U S A2022
35353161Three interacting regions of the Ndc80 and Dam1 complexes support microtubule tip-coupling under load.J Cell Biol2022
35716664Cullin-independent recognition of HHARI substrates by a dynamic RBR catalytic domain.Structure2022
35184559Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry.Anal Chem2022
33949948CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation.Elife2021
33752231Microtubule-associated proteins and motors required for ectopic microtubule array formation in Saccharomyces cerevisiae.Genetics2021
34926718VTT-006, an anti-mitotic compound, binds to the Ndc80 complex and suppresses cancer cell growth <i>in vitro</i>.Oncoscience2021
34618572Edmond Fischer (1920-2021).Science2021
32406818Reconstitution reveals two paths of force transmission through the kinetochore.Elife2020
33202170Biochemical evidence for diverse strategies in the inner kinetochore.Open Biol2020
32946748Cdk1 Phosphorylation of the Dam1 Complex Strengthens Kinetochore-Microtubule Attachments.Curr Biol2020
32726183XMAP215 and γ-tubulin additively promote microtubule nucleation in purified solutions.Mol Biol Cell2020
30525651Proxl (Protein Cross-Linking Database): A Public Server, QC Tools, and Other Major Updates.J Proteome Res2019
31584935Kinetochore-associated Stu2 promotes chromosome biorientation in vivo.PLoS Genet2019
31045495Tight bending of the Ndc80 complex provides intrinsic regulation of its binding to microtubules.Elife2019
31045356First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.Anal Chem2019
31078123Seeing is believing: our evolving view of kinetochore structure, composition, and assembly.Curr Opin Cell Biol2019
29487209Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore-microtubule attachments.Proc Natl Acad Sci U S A2018
29903865Novel phosphorylation states of the yeast spindle pole body.Biol Open2018
30392931A Bifunctional Role for the UHRF1 UBL Domain in the Control of Hemi-methylated DNA-Dependent Histone Ubiquitylation.Mol Cell2018
29386393Identification of Wiskott-Aldrich syndrome protein (WASP) binding sites on the branched actin filament nucleator Arp2/3 complex.Proc Natl Acad Sci U S A2018
28814505The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling.Mol Biol Cell2017
28191870The Ndc80 complex bridges two Dam1 complex rings.Elife2017
28331072Direct measurement of the strength of microtubule attachment to yeast centrosomes.Mol Biol Cell2017
26968363Structure of γ-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure.J Struct Biol2016
27760110Corrigendum: Design of a hyperstable 60-subunit protein icosahedron.Nature2016
27805565Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer.Elife2016
27302480ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data.J Proteome Res2016
27226487Higher-order oligomerization of Spc110p drives γ-tubulin ring complex assembly.Mol Biol Cell2016
27193850Purification of Fluorescently Labeled Saccharomyces cerevisiae Spindle Pole Bodies.Methods Mol Biol2016
27140922Single-Molecule Total Internal Reflection Fluorescence Microscopy.Cold Spring Harb Protoc2016
27140911Coverslip Cleaning and Functionalization for Total Internal Reflection Fluorescence Microscopy.Cold Spring Harb Protoc2016
27140912Preparation of Reactions for Imaging with Total Internal Reflection Fluorescence Microscopy.Cold Spring Harb Protoc2016
27309817Design of a hyperstable 60-subunit protein dodecahedron. [corrected].Nature2016
25599398Ring closure activates yeast γTuRC for species-specific microtubule nucleation.Nat Struct Mol Biol2015
26430240Regulation of outer kinetochore Ndc80 complex-based microtubule attachments by the central kinetochore Mis12/MIND complex.Proc Natl Acad Sci U S A2015
26560693The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling.Nat Commun2015
26133526Visualization and dissemination of multidimensional proteomics data comparing protein abundance during Caenorhabditis elegans development.J Am Soc Mass Spectrom2015
25884379Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences.BMC Res Notes2015
25812159Kojak: efficient analysis of chemically cross-linked protein complexes.J Proteome Res2015
25139910Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data.Mol Cell Proteomics2014
25236177Kinetochores require oligomerization of Dam1 complex to maintain microtubule attachments against tension and promote biorientation.Nat Commun2014
25230952Kinetochore biorientation in Saccharomyces cerevisiae requires a tightly folded conformation of the Ndc80 complex.Genetics2014
25382489In-line separation by capillary electrophoresis prior to analysis by top-down mass spectrometry enables sensitive characterization of protein complexes.J Proteome Res2014
25056180SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences.BMC Res Notes2014
23720455Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast.Genome Res2013
23833183Coupling unbiased mutagenesis to high-throughput DNA sequencing uncovers functional domains in the Ndc80 kinetochore protein of Saccharomyces cerevisiae.Genetics2013
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Collaborators

University of Washington
Co-authored papers 30
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Co-authored papers 27
University of Washington
Co-authored papers 21
University of Washington
Co-authored papers 19
University of Washington
Co-authored papers 12
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Co-authored papers 10
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 9
University of Washington-Genome Sciences
Co-authored papers 8
University of Washington
Co-authored papers 7
TheScripps Research Institute
Co-authored papers 7
Institute for Systems Biology
Co-authored papers 7
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Co-authored papers 6
University of Washington
Co-authored papers 6
University of California San Francisco
Co-authored papers 5
University of Washington
Co-authored papers 5
University of Washington
Co-authored papers 5
University of Washington
Co-authored papers 5
Co-authored papers 5
University of California davis
Co-authored papers 4
University of California san francisco
Co-authored papers 3
University of California san francisco
Co-authored papers 3
Institut Pasteur, Universite Paris Cite, CNRS UMR 8
Co-authored papers 3
University of Illinois
Co-authored papers 3
University of Toronto
Co-authored papers 3
Pennsylvania Muscle Institute, University of Pennsylvania Perelman School of Medicine
Co-authored papers 2
the University of Texas Southwestern Medical Center
Co-authored papers 2
University of North Carolina at Chapel Hill
Co-authored papers 2
Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation
Co-authored papers 2
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Co-authored papers 2