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Author Details

Charles Y Chiu
University of California-San Francisco
1991
180
62
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35883256Transfusion-Transmitted Cache Valley Virus Infection in a Kidney Transplant Recipient With Meningoencephalitis.Clin Infect Dis2023
37025159Purifying selection decreases the potential for Bangui orthobunyavirus outbreaks in humans.Virus Evol2023
36958034Powassan Virus Infection Detected by Metagenomic Next-Generation Sequencing, Ohio, USA.Emerg Infect Dis2023
37113001Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two African Individuals Enrolled in Blood-Borne Surveillance.Viruses2023
37339889Complement Factor I Gene Variant as a Treatable Cause of Recurrent Aseptic Neutrophilic Meningitis: A Case Report.Neurol Neuroimmunol Neuroinflamm2023
37308590Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases.Nat Microbiol2023
35087081Efficacy of an inactivated Zika vaccine against virus infection during pregnancy in mice and marmosets.NPJ Vaccines2022
35396471Unlocking capacities of genomics for the COVID-19 response and future pandemics.Nat Methods2022
35818068Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections.Genome Med2022
35987764Author Correction: Efficacy of an inactivated Zika vaccine against virus infection during pregnancy in mice and marmosets.NPJ Vaccines2022
35922434An intranasal ASO therapeutic targeting SARS-CoV-2.Nat Commun2022
35879995A diagnostic classifier for gene expression-based identification of early Lyme disease.Commun Med (Lond)2022
35013591Predominance of antibody-resistant SARS-CoV-2 variants in vaccine breakthrough cases from the San Francisco Bay Area, California.Nat Microbiol2022
35273641Individualized Constellation of Killer Cell Immunoglobulin-Like Receptors and Cognate HLA Class I Ligands that Controls Natural Killer Cell Antiviral Immunity Predisposes COVID-19.Front Genet2022
32821935Community Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Disproportionately Affects the Latinx Population During Shelter-in-Place in San Francisco.Clin Infect Dis2021
33521749Cell-free DNA tissues of origin by methylation profiling reveals significant cell, tissue, and organ-specific injury related to COVID-19 severity.Med2021
33712587Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.Nat Commun2021
33870421Pathologic Findings Associated With a Case of Acute Flaccid Myelitis.J Neuropathol Exp Neurol2021
33758899Transmission, infectivity, and antibody neutralization of an emerging SARS-CoV-2 variant in California carrying a L452R spike protein mutation.medRxiv2021
33536218A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood.Sci Adv2021
33893501Introduction, Transmission Dynamics, and Fate of Early Severe Acute Respiratory Syndrome Coronavirus 2 Lineages in Santa Clara County, California.J Infect Dis2021
33861950Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.Cell2021
34969106The Role of Metagenomics and Next-Generation Sequencing in Infectious Disease Diagnosis.Clin Chem2021
34548659Author Correction: Pan-viral serology implicates enteroviruses in acute flaccid myelitis.Nat Med2021
34462750The B.1.427/1.429 (epsilon) SARS-CoV-2 variants are more virulent than ancestral B.1 (614G) in Syrian hamsters.bioRxiv2021
34515766Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid.JAMA Neurol2021
33991487Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant.Cell2021
34074327Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids.Genome Med2021
34153975In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains.Nature2021
34322569Use of Metagenomic Next-Generation Sequencing to Identify Pathogens in Pediatric Osteoarticular Infections.Open Forum Infect Dis2021
34294116Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri.BMC Biol2021
34330709SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay.Sci Adv2021
33169017Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids.Nat Med2021
33308357Timely intervention and control of a novel coronavirus (COVID-19) outbreak at a large skilled nursing facility-San Francisco, California, 2020.Infect Control Hosp Epidemiol2021
33330916Connecting the Dots: Translating the Vaginal Microbiome Into a Drug.J Infect Dis2021
33261720Fatal Case of Chronic Jamestown Canyon Virus Encephalitis Diagnosed by Metagenomic Sequencing in Patient Receiving Rituximab.Emerg Infect Dis2021
31619533Point-Counterpoint: Should We Be Performing Metagenomic Next-Generation Sequencing for Infectious Disease Diagnosis in the Clinical Laboratory?J Clin Microbiol2020
34109255Universal Polymerase Chain Reaction and Antibody Testing Demonstrate Little to No Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 in a Rural Community.Open Forum Infect Dis2020
31965087Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.Nat Microbiol2020
31932713Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.Nat Microbiol2020
32106547Human Tibroviruses: Commensals or Lethal Pathogens?Viruses2020
31940319Exploratory analysis of the potential for advanced diagnostic testing to reduce healthcare expenditures of patients hospitalized with meningitis or encephalitis.PLoS One2020
33112933Rapid deployment of SARS-CoV-2 testing: The CLIAHUB.PLoS Pathog2020
32864588Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19.EClinicalMedicine2020
32943630SARS-CoV-2 seroprevalence and neutralizing activity in donor and patient blood.Nat Commun2020
32941977Optimization and clinical validation of dual-target RT-LAMP for SARS-CoV-2.J Virol Methods2020
32999034Two Sides of a Coin: a Zika Virus Mutation Selected in Pregnant Rhesus Macaques Promotes Fetal Infection in Mice but at a Cost of Reduced Fitness in Nonpregnant Macaques and Diminished Transmissibility by Vectors.J Virol2020
32938700Competitive SARS-CoV-2 Serology Reveals Most Antibodies Targeting the Spike Receptor-Binding Domain Compete for ACE2 Binding.mSphere2020
32855547Evaluation of SARS-CoV-2 serology assays reveals a range of test performance.Nat Biotechnol2020
32768390STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies.Lancet Infect Dis2020
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Collaborators

University of CaliforniaSan Francisco
Co-authored papers 56
University of California San Francisco
Co-authored papers 30
University of Washington Medical Center
Co-authored papers 28
Weill Institute for Neurosciences, University of California-San Francisco
Co-authored papers 20
University of California San Francisco
Co-authored papers 16
Weill Institute for Neurosciences, University of California san francisco
Co-authored papers 12
Memorial Sloan Kettering Cancer Center
Co-authored papers 9
Vitalant Research Institute
Co-authored papers 9
University of California San Francisco
Co-authored papers 9
Scientific Services
Co-authored papers 8
National Institute of Biomedical Research (INRB)
Co-authored papers 7
University of California San Francisco
Co-authored papers 7
University of California san francisco
Co-authored papers 6
Co-authored papers 6
Vitalant Research Institute
Co-authored papers 5
Feil Family Brain and Mind Research Institute.
Co-authored papers 5
Gladstone-UCSF Institute of Genomic Immunology
Co-authored papers 5
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 5
The Salk Institute for Biological Studies
Co-authored papers 5
Memorial Sloan Kettering Cancer Center
Co-authored papers 5
University of California san francisco
Co-authored papers 5
Rice University
Co-authored papers 5
University of California San Francisco School of Medicine
Co-authored papers 4
University of California san francisco
Co-authored papers 4
Gladstone-UCSF Institute of Genomic Immunology
Co-authored papers 4
Department of Pharmaceutical Chemistry, University of California San Francisco
Co-authored papers 3
Fred Hutchinson Cancer Center
Co-authored papers 3
University of California san francisco
Co-authored papers 3
Co-authored papers 3
University of Toledo
Co-authored papers 3