Author details

Full Name

Joseph Zaia

Affiliation

ORCID

Career Start Year

1987

Papers

162

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36177493	Proteomics-based mass spectrometry profiling of SARS-CoV-2 infection from human nasopharyngeal samples.	Mass Spectrometry Reviews	2024
37350811	<i>De novo</i> glycan sequencing by electronic excitation dissociation MS<sup>2</sup>-guided MS<sup>3</sup> analysis on an Omnitrap-Orbitrap hybrid instrument.	Chem Sci	2023
35719114	Mass spectrometry methods for analysis of extracellular matrix components in neurological diseases.	Mass Spectrom Rev	2023
37728749	Analysis of complex proteoglycans using serial proteolysis and EThcD provides deep N- and O-glycoproteomic coverage.	Anal Bioanal Chem	2023
37728748	Antiracism in biomolecular research.		2023
37787855	Recent advances and future developments in ultrasensitive omics.		2023
37398011	RAMZIS: a bioinformatic toolkit for rigorous assessment of the alterations to glycoprotein structure that occur during biological processes.		2023
36480915	Glycoproteomic Analyses of Influenza A Viruses Using timsTOF Pro MS.		2023
36602567	The 2022 Nobel Prize in Chemistry for the development of click chemistry and bioorthogonal chemistry.		2023
35348694	The minimum information required for a glycomics experiment (MIRAGE): reporting guidelines for capillary electrophoresis.	Glycobiology	2022
36179500	Editorial overview: Protein-carbohydrate complexes and glycosylation.	Curr Opin Struct Biol	2022
36103992	Improving Statistical Certainty of Glycosylation Similarity between Influenza A Virus Variants Using Data-Independent Acquisition Mass Spectrometry.	Molecular and Cellular Proteomics	2022
35452871	Measuring change in glycoprotein structure.	Current Opinion in Structural Biology	2022
36136114	O-Glycoproteomic analysis of engineered heavily glycosylated fusion proteins using nanoHILIC-MS.	Analytical and Bioanalytical Chemistry	2022
33764573	Methods to improve quantitative glycoprotein coverage from bottom-up LC-MS data.	Mass Spectrometry Reviews	2022
33822051	Influence of saccharide modifications on heparin lyase III substrate specificities.	Glycobiology	2022
35202840	In-Depth Matrisome and Glycoproteomic Analysis of Human Brain Glioblastoma Versus Control Tissue.	Mol Cell Proteomics	2022
34893784	Author Correction: Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis.	Nat Methods	2022
35112150	Matrisome changes in Parkinson's disease.	Anal Bioanal Chem	2022
35090117	Resolving Heparan Sulfate Oligosaccharide Positional Isomers Using Hydrophilic Interaction Liquid Chromatography-Cyclic Ion Mobility Mass Spectrometry.	Analytical Chemistry	2022
34635934	Data-independent acquisition mass spectrometry for site-specific glycoproteomics characterization of SARS-CoV-2 spike protein.	Analytical and Bioanalytical Chemistry	2021
33585200	Expression of the Extracellular Sulfatase <i>SULF2</i> Affects Survival of Head and Neck Squamous Cell Carcinoma Patients.	Front Oncol	2021
34209670	Selective Inhibition of Heparan Sulphate and Not Chondroitin Sulphate Biosynthesis by a Small, Soluble Competitive Inhibitor.	International Journal of Molecular Sciences	2021
33992776	GAGrank: Software for Glycosaminoglycan Sequence Ranking Using a Bipartite Graph Model.	Molecular and Cellular Proteomics	2021
33441484	The 3--sulfation of heparan sulfate modulates protein binding and lyase degradation.	Proceedings of the National Academy of Sciences of the United States of America	2021
33761173	Glycoproteomic Sample Processing, LC-MS, and Data Analysis Using GlycReSoft.	Current Protocols	2021
32883803	Calculating Glycoprotein Similarities From Mass Spectrometric Data.	Molecular and Cellular Proteomics	2021
34725484	Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis.	Nat Methods	2021
34443345	The Need for Community Standards to Enable Accurate Comparison of Glycoproteomics Algorithm Performance.	Molecules	2021
34595557	Analytical characterization of viruses.	Analytical and Bioanalytical Chemistry	2021
32888403	Native Mass Spectrometry Sheds Light on Formation of Deadly Heparin-PF4 Complexes.	Biophysical Journal	2020
31591262	NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods.	Mol Cell Proteomics	2020
32309832	Serial in-solution digestion protocol for mass spectrometry-based glycomics and proteomics analysis.	Mol Omics	2020
31833756	A Perspective on the Confident Comparison of Glycoprotein Site-Specific Glycosylation in Sample Cohorts.	Biochemistry	2020
31829560	Toward Automatic and Comprehensive Glycan Characterization by Online PGC-LC-EED MS/MS.	Anal Chem	2020
32223173	Relative Retention Time Estimation Improves N-Glycopeptide Identifications by LC-MS/MS.	Journal of Proteome Research	2020
32393178	Multi-task learning sparse group lasso: a method for quantifying antigenicity of influenza A(H1N1) virus using mutations and variations in glycosylation of Hemagglutinin.	BMC Bioinformatics	2020
32601173	Measuring Site-specific Glycosylation Similarity between Influenza a Virus Variants with Statistical Certainty.	Molecular and Cellular Proteomics	2020
33141553	Glycosylation of Serum Clusterin in Wild-Type Transthyretin-Associated (ATTRwt) Amyloidosis: A Study of Disease-Associated Compositional Features Using Mass Spectrometry Analyses.	Biochemistry	2020
32733076	A glycomics and proteomics study of aging and Parkinson's disease in human brain.	Scientific Reports	2020
31423779	Sequencing Heparan Sulfate Using HILIC LC-NETD-MS/MS.	Analytical Chemistry	2019
31572832	Characterization of Glycosaminoglycans in Gaping and Intact Connective Tissues of Farmed Atlantic Salmon () Fillets by Mass Spectrometry.	ACS Omega	2019
31660297	On-slide tissue digestion for mass spectrometry based glycomic and proteomic profiling.	MethodsX	2019
31604803	Why Glycosylation Matters in Building a Better Flu Vaccine.	Molecular and Cellular Proteomics	2019
30649866	Characterization and Quantification of Highly Sulfated Glycosaminoglycan Isomers by Gated-Trapped Ion Mobility Spectrometry Negative Electron Transfer Dissociation MS/MS.	Anal Chem	2019
30563850	psims - A Declarative Writer for mzML and mzIdentML for Python.	Molecular and Cellular Proteomics	2019
31471497	Proteomics, Glycomics, and Glycoproteomics of Matrisome Molecules.	Mol Cell Proteomics	2019
31343316	Structural studies of serum clusterin in ATTRwt amyloidosis.	Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis	2019
31310539	glypy: An Open Source Glycoinformatics Library.	Journal of Proteome Research	2019
29769321	Lectin-mediated binding and sialoglycans of porcine surfactant protein D synergistically neutralize influenza A virus.	Journal of Biological Chemistry	2018