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Author Details

Samuel V Angiuoli
Personal Genome Diagnostics Inc.
2001
53
38
PMIDPaper TitleJournal TitlePublished Year
36534496Metastatic Colorectal Cancer Treatment Response Evaluation by Ultra-Deep Sequencing of Cell-Free DNA and Matched White Blood Cells.Clin Cancer Res2023
35483877Tumor-immune microenvironment revealed by Imaging Mass Cytometry in a metastatic sarcomatoid urothelial carcinoma with a prolonged response to pembrolizumab.Cold Spring Harb Mol Case Stud2022
35595835Automated next-generation profiling of genomic alterations in human cancers.Nat Commun2022
34286887Validation of a Circulating Tumor DNA-Based Next-Generation Sequencing Assay in a Cohort of Patients with Solid tumors: A Proposed Solution for Decentralized Plasma Testing.Oncologist2021
34314880Next-Generation Sequencing Concordance Analysis of Comprehensive Solid Tumor Profiling between a Centralized Specialty Laboratory and the Decentralized Personal Genome Diagnostics elio Tissue Complete Kitted Solution.J Mol Diagn2021
31506389Noninvasive Detection of Microsatellite Instability and High Tumor Mutation Burden in Cancer Patients Treated with PD-1 Blockade.Clin Cancer Res2019
30185652A machine learning approach for somatic mutation discovery.Sci Transl Med2018
30027257Regarding the Congruence Between 2 Circulating Tumor DNA Sequencing Assays.JAMA Oncol2018
28814544Direct detection of early-stage cancers using circulating tumor DNA.Sci Transl Med2017
28187516Collaborating to Compete: Blood Profiling Atlas in Cancer (BloodPAC) Consortium.Clin Pharmacol Ther2017
28449639CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline.BMC Genomics2017
25406187Notch1 mutations are drivers of oral tumorigenesis.Cancer Prev Res (Phila)2015
25877891Personalized genomic analyses for cancer mutation discovery and interpretation.Sci Transl Med2015
24634382Integrated next-generation sequencing and avatar mouse models for personalized cancer treatment.Clin Cancer Res2014
25233892Genomic analyses of gynaecologic carcinosarcomas reveal frequent mutations in chromatin remodelling genes.Nat Commun2014
24451270CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota.Microbiome2013
22121156Using Sybil for interactive comparative genomics of microbes on the web.Bioinformatics2012
22436396Progresses in the pursuit of aldose reductase inhibitors: the structure-based lead optimization step.Eur J Med Chem2012
21078854A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation.Infect Immun2011
22028928Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing.PLoS One2011
21784931Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.J Bacteriol2011
21878105CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing.BMC Bioinformatics2011
21718539Improving pan-genome annotation using whole genome multiple alignment.BMC Bioinformatics2011
21677861The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.Stand Genomic Sci2011
21368196Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination.Proc Natl Acad Sci U S A2011
21148543Mugsy: fast multiple alignment of closely related whole genomes.Bioinformatics2011
19850722GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database.Nucleic Acids Res2010
21034474Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species.Genome Biol2010
20413634Ergatis: a web interface and scalable software system for bioinformatics workflows.Bioinformatics2010
19436743Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism.PLoS One2009
18416670Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation.OMICS2008
18843361Comparative genomics of the neglected human malaria parasite Plasmodium vivax.Nature2008
18464787The minimum information about a genome sequence (MIGS) specification.Nat Biotechnol2008
18564916Toward a standards-compliant genomic and metagenomic publication record.OMICS2008
18564915Meeting report: the fifth Genomic Standards Consortium (GSC) workshop.OMICS2008
18564914Meeting report: the fourth Genomic Standards Consortium (GSC) workshop.OMICS2008
18404212Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.PLoS Genet2008
17712414The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists.PLoS One2007
18314579Sybil: methods and software for multiple genome comparison and visualization.Methods Mol Biol2007
17885136Draft genome of the filarial nematode parasite Brugia malayi.Science2007
16385065Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set.J Bacteriol2006
30408921Whole genome comparison of the A. fumigatus family.Med Mycol2006
15774886Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.J Bacteriol2005
16172379Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".Proc Natl Acad Sci U S A2005
15994558Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes.Science2005
16020724Comparative genomics of trypanosomatid parasitic protozoa.Science2005
15115801Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.Nucleic Acids Res2004
15003838Gene synteny and evolution of genome architecture in trypanosomatids.Mol Biochem Parasitol2004
14960714The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1.Nucleic Acids Res2004
12368865Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii.Nature2002
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Collaborators

Owen White
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 26
Claire M Fraser
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 14
Jonathan Crabtree
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 12
Steven L Salzberg
Center for Computational Biology, Johns Hopkins University
Co-authored papers 12
Siân Jones
Co-authored papers 9
Jennifer R Wortman
Broad Institute of MIT and Harvard
Co-authored papers 9
Victor E Velculescu
Co-authored papers 9
Jeremy Peterson
The Institute for Genomic Research, 9712 Medical Center Drive
Co-authored papers 8
Ian T Paulsen
Macquarie University
Co-authored papers 7
Jeremy D Selengut
Craig Venter Institute, 9704 Medical Center Drive
Co-authored papers 6
J C Venter
The J. Craig Venter Institute
Co-authored papers 6
Neil Hall
Earlham Institute
Co-authored papers 6
Daniel H Haft
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 6
Jane M Carlton
Center for Genomics and Systems Biology
Co-authored papers 6
Dawn Field
Biodiversity Institute, University of Oxford
Co-authored papers 5
William C Nelson
Pacific Northwest National Laboratory
Co-authored papers 5
Malcolm J Gardner
J. Craig Venter Institute
Co-authored papers 5
Jonathan E Allen
The Institute for Genomic Research
Co-authored papers 5
Karen E Nelson
J. Craig Venter Institute, 9605 Medical Center Drive
Co-authored papers 5
Mihaela Pertea
Center for Computational Biology, Johns Hopkins University
Co-authored papers 5
George M Garrity
Michigan State University
Co-authored papers 5
Nikos C Kyrpides
Co-authored papers 5
Brian J Haas
Broad Institute of MIT and Harvard
Co-authored papers 5
Jaideep P Sundaram
Co-authored papers 4
Elodie Ghedin
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 4
Anup Mahurkar
Co-authored papers 4
Guy Cochrane
European Bioinformatics Institute
Co-authored papers 4
Matthew Berriman
Wellcome Sanger Institute
Co-authored papers 4
Bernard Suh
Center for Biomolecular Science and Engineering, University of California
Co-authored papers 4
Vishvanath Nene
International Livestock Research Institute (ILRI)
Co-authored papers 4
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