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Author Details

Joseph Bondy-Denomy
University of California san francisco
2008
73
38
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36711836Next-generation interaction proteomics for quantitative Jumbophage-bacteria interaction mapping.bioRxiv2023
38014003Single phage proteins sequester TIR- and cGAS-generated signaling molecules.bioRxiv2023
38009936Identification of an anti-CRISPR protein that inhibits the CRISPR-Cas type I-B system in <i>Clostridioides difficile</i>.mSphere2023
38064533Cas9 degradation in human cells using phage anti-CRISPR proteins.PLoS Biol2023
37620325Next-generation proteomics for quantitative Jumbophage-bacteria interaction mapping.Nat Commun2023
36958604Ten Years of Anti-CRISPR Research.J Mol Biol2023
37178480Defining the expanding mechanisms of phage-mediated activation of bacterial immunity.Curr Opin Microbiol2023
37140042Core defense hotspots within Pseudomonas aeruginosa are a consistent and rich source of anti-phage defense systems.Nucleic Acids Res2023
37260386F-Type Pyocins Are Diverse Noncontractile Phage Tail-Like Weapons for Killing <i>Pseudomonas aeruginosa</i>.J Bacteriol2023
36750095Bacteriophages inhibit and evade cGAS-like immune function in bacteria.Cell2023
36807264The Ï¿PA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice.Nat Commun2023
35119310Genetic Manipulation of a CAST of Characters in a Microbial Community.CRISPR J2022
35670674CRISPR-Cas12a targeting of ssDNA plays no detectable role in immunity.Nucleic Acids Res2022
35421333A single bacterial enzyme i(NHI)bits phage DNA replication.Cell Host Microbe2022
35623354Lack of Cas13a inhibition by anti-CRISPR proteins from Leptotrichia prophages.Mol Cell2022
35389256Distinct Subcellular Localization of a Type I CRISPR Complex and the Cas3 Nuclease in Bacteria.J Bacteriol2022
36163386Structural basis of AcrIF24 as an anti-CRISPR protein and transcriptional suppressor.Nat Chem Biol2022
36316452Bacteriophage genome engineering with CRISPR-Cas13a.Nat Microbiol2022
34880417Publisher Correction: CRISPR inactivation by integration.Nat Microbiol2022
33412111A phage-encoded anti-activator inhibits quorum sensing in Pseudomonas aeruginosa.Mol Cell2021
33544853Mobile element warfare via CRISPR and anti-CRISPR in Pseudomonas aeruginosa.Nucleic Acids Res2021
34819641CRISPR inactivation by integration.Nat Microbiol2021
34093491Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems.Front Microbiol2021
33444542Anti-CRISPRs go viral: The infection biology of CRISPR-Cas inhibitors.Cell Host Microbe2021
32203383Anti-CRISPR protein applications: natural brakes for CRISPR-Cas technologies.Nat Methods2020
32047285Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.Nat Microbiol2020
31819262A bacteriophage nucleus-like compartment shields DNA from CRISPR nucleases.Nature2020
33077967A compact Cascade-Cas3 system for targeted genome engineering.Nat Methods2020
33159058Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements.Nat Commun2020
32728052Machine-learning approach expands the repertoire of anti-CRISPR protein families.Nat Commun2020
32868402Intracellular Organization by Jumbo Bacteriophages.J Bacteriol2020
32218510Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer.Nat Microbiol2020
32503371Structures and Strategies of Anti-CRISPR-Mediated Immune Suppression.Annu Rev Microbiol2020
32327734Author Correction: Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer.Nat Microbiol2020
32325050Listeria Phages Induce Cas9 Degradation to Protect Lysogenic Genomes.Cell Host Microbe2020
32325051Critical Anti-CRISPR Locus Repression by a Bi-functional Cas9 Inhibitor.Cell Host Microbe2020
32203410Bacterial alginate regulators and phage homologs repress CRISPR-Cas immunity.Nat Microbiol2020
30643127Anti-CRISPR-mediated control of gene editing and synthetic circuits in eukaryotic cells.Nat Commun2019
31730615Molecular mechanism of azithromycin resistance among typhoidal Salmonella strains in Bangladesh identified through passive pediatric surveillance.PLoS Negl Trop Dis2019
31809194A Type IV-A CRISPR-Cas System in <i>Pseudomonas aeruginosa</i> Mediates RNA-Guided Plasmid Interference <i>In Vivo</i>.CRISPR J2019
31474367Anti-CRISPR-Associated Proteins Are Crucial Repressors of Anti-CRISPR Transcription.Cell2019
31295418Cas13 Helps Bacteria Play Dead when the Enemy Strikes.Cell Host Microbe2019
31492655CRISPR-Cas System of a Prevalent Human Gut Bacterium Reveals Hyper-targeting against Phages in a Human Virome Catalog.Cell Host Microbe2019
31332386Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.Nat Microbiol2019
30595438Temperature-Responsive Competitive Inhibition of CRISPR-Cas9.Mol Cell2019
29169146How bacteria control the CRISPR-Cas arsenal.Curr Opin Microbiol2018
30190308Discovery of widespread type I and type V CRISPR-Cas inhibitors.Science2018
30150232Phage Morons Play an Important Role in Pseudomonas aeruginosa Phenotypes.J Bacteriol2018
30033364Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity.Cell2018
31021273A Unified Resource for Tracking Anti-CRISPR Names.CRISPR J2018
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Collaborators

Alan R Davidson
University of Toronto, University Avenue
Co-authored papers 21
Adair L Borges
Innovative Genomics Institute, University of California berkeley
Co-authored papers 12
Benjamin P Kleinstiver
Center for Genomic Medicine, Massachusetts General Hospital
Co-authored papers 5
David A Agard
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 4
Benjamin J Rauch
Portland State University
Co-authored papers 4
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 4
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 3
Jennifer A Doudna
Innovative Genomics Institute, University of California berkeley
Co-authored papers 3
Simon Roux
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Axel Visel
Co-authored papers 2
Andrea Fossati
J. David Gladstone Institutes
Co-authored papers 2
Adrian Pelin
University of Ottawa
Co-authored papers 2
Gabriel C Lander
The Scripps Research Institute
Co-authored papers 2
Tanja Woyke
Co-authored papers 2
Nikos C Kyrpides
Co-authored papers 2
Sabrina Y Stanley
University of Toronto, University Avenue
Co-authored papers 2
Emiley A Eloe-Fadrosh
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Eliza Nieweglowska
University of California San Francisco
Co-authored papers 1
Sampriti Mukherjee
University of Chicago
Co-authored papers 1
Yuping Li
University of California San Francisco
Co-authored papers 1
Judd F Hultquist
Northwestern University Feinberg School of Medicine
Co-authored papers 1
Megha Shah
University of Toronto, University Avenue
Co-authored papers 1
Baron Guo
University of California San Francisco
Co-authored papers 1
David Baker
University of Washington
Co-authored papers 1
Eliza Nieweglowska
Co-authored papers 1
John W Barrett
University of Western Ontario
Co-authored papers 1
George A O'Toole
Geisel School of Medicine at Dartmouth
Co-authored papers 1
Elizabeth R Fischer
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 1
Deepto Mozumdar
Co-authored papers 1
Baron Guo
Co-authored papers 1
Release 1.2