Author details

Full Name

Julie Bernauer

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
27924488	Elucidating Mechanisms of Molecular Recognition Between Human Argonaute and miRNA Using Computational Approaches.	Methods Mol Biol	2017
28398456	GARN2: coarse-grained prediction of 3D structure of large RNA molecules by regret minimization.		2017
27028235	Probing RNA Native Conformational Ensembles with Structural Constraints.	J Comput Biol	2016
26756780	Coupled Motions in Î²2AR:GÎ±s Conformational Ensembles.	J Chem Theory Comput	2016
26181723	Markov State Models Reveal a Two-Step Mechanism of miRNA Loading into the Human Argonaute Protein: Selective Binding followed by Structural Re-arrangement.	PLoS Comput Biol	2015
26313379	GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies.	PLoS ONE	2015
25114056	Characterizing RNA ensembles from NMR data with kinematic models.	Nucleic Acids Res	2014
25268579	Protein-RNA complexes and efficient automatic docking: expanding RosettaDock possibilities.	PLoS ONE	2014
25135523	In vivo tmRNA protection by SmpB and pre-ribosome binding conformation in solution.	RNA	2014
22228511	Multiscale modeling of macromolecular biosystems.	Briefings in Bioinformatics	2012
22809345	Evaluating mixture models for building RNA knowledge-based potentials.	J Bioinform Comput Biol	2012
22001016	Community-wide assessment of protein-interface modeling suggests improvements to design methodology.	J Mol Biol	2011
21526112	A collaborative filtering approach for protein-protein docking scoring functions.	PLoS ONE	2011
21521828	Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation.	RNA	2011
20185407	ESBTL: efficient PDB parser and data structure for the structural and geometric analysis of biological macromolecules.		2010
18204058	DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions.		2008
17237048	A new protein-protein docking scoring function based on interface residue properties.		2007
16707489	Catalytic mechanism and structure of viral flavin-dependent thymidylate synthase ThyX.	Journal of Biological Chemistry	2006
16204845	A docking analysis of the statistical physics of protein-protein recognition.	Physical Biology	2005
15930618	HalX: an open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories.	Acta Crystallogr D Biol Crystallogr	2005