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Author Details

Nathan D Olson
National Institute of Standards and Technology
2010
31
18
PMIDPaper TitleJournal TitlePublished Year
37178559Rapid production and free distribution of a synthetic RNA material to support SARS-CoV-2 molecular diagnostic testing.Biologicals2023
37961319Benchmarking of small and large variants across tandem repeats.bioRxiv2023
37612512The complete sequence of a human Y chromosome.Nature2023
37059810Variant calling and benchmarking in an era of complete human genome sequences.Nat Rev Genet2023
36989327Precision engineering of biological function with large-scale measurements and machine learning.PLoS One2023
35132260Curated variation benchmarks for challenging medically relevant autosomal genes.Nat Biotechnol2022
35720974PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions.Cell Genom2022
35357935A complete reference genome improves analysis of human genetic variation.Science2022
34913592The genotype-phenotype landscape of an allosteric protein.Mol Syst Biol2021
33784029The genotype-phenotype landscape of an allosteric protein.Mol Syst Biol2021
32487205Assembly and annotation of an Ashkenazi human reference genome.Genome Biol2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32541955A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
28968737Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.Brief Bioinform2019
31406327Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.Nat Biotechnol2019
31201313High-coverage, long-read sequencing of Han Chinese trio reference samples.Sci Data2019
30936564An open resource for accurately benchmarking small variant and reference calls.Nat Biotechnol2019
30821316metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data.Bioinformatics2019
30396371Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.Microbiome2018
29929281Conventional wastewater treatment and reuse site practices modify bacterial community structure but do not eliminate some opportunistic pathogens in reclaimed water.Sci Total Environ2018
28063650Performing Skin Microbiome Research: A Method to the Madness.J Invest Dermatol2017
28924496Challenging a bioinformatic tool's ability to detect microbial contaminants using <i>in silico</i> whole genome sequencing data.PeerJ2017
28635638Antibiotic Concentrations Decrease during Wastewater Treatment but Persist at Low Levels in Reclaimed Water.Int J Environ Res Public Health2017
27077050Evaluation of microbial qPCR workflows using engineered Saccharomyces cerevisiae.Biomol Detect Quantif2016
26935931PEPR: pipelines for evaluating prokaryotic references.Anal Bioanal Chem2016
26217378Best practices for evaluating single nucleotide variant calling methods for microbial genomics.Front Genet2015
27077030International interlaboratory study comparing single organism 16S rRNA gene sequencing data: Beyond consensus sequence comparisons.Biomol Detect Quantif2015
24217873Diazotrophic diversity in the Caribbean coral, Montastraea cavernosa.Arch Microbiol2013
22706055Impact of processing method on recovery of bacteria from wipes used in biological surface sampling.Appl Environ Microbiol2012
23206278DNA extract characterization process for microbial detection methods development and validation.BMC Res Notes2012
20674366Nitrogen fixation and nitrogen transformations in marine symbioses.Trends Microbiol2010
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Collaborators

Justin M Zook
National Institute of Standards and Technology
Co-authored papers 16
Fritz J Sedlazeck
Baylor College of Medicine
Co-authored papers 9
Marc Salit
Stanford University
Co-authored papers 9
Chunlin Xiao
Chongqing Aier Eye Hospital
Co-authored papers 6
Aaron M Wenger
Stanford School of Medicine
Co-authored papers 6
Sergey Koren
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 6
Jennifer McDaniel
National Institute of Standards and Technology
Co-authored papers 5
Michael C Schatz
Johns Hopkins University
Co-authored papers 5
Adam M Phillippy
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 5
Nancy F Hansen
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 4
Joyce Lee
Co-authored papers 4
Sayed Mohammad Ebrahim Sahraeian
Roche Sequencing Solutions Inc.
Co-authored papers 4
Andrew Carroll
Google LLC
Co-authored papers 4
Stephen T Sherry
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 4
Arkarachai Fungtammasan
DNAnexus Inc.
Co-authored papers 3
Christopher E Mason
Feil Family Brain and Mind Research Institute.
Co-authored papers 3
Mark J P Chaisson
University of Southern California
Co-authored papers 3
Mihai Pop
Co-authored papers 3
Jeffrey A Rosenfeld
Cancer Institute of New Jersey
Co-authored papers 3
Tobias Marschall
Center for Digital Medicine, Heinrich Heine University Dusseldorf
Co-authored papers 3
Alexandre Rouette
Charles-Bruneau Cancer Center, Centre Hospitalier Universitaire (CHU) Sainte-Justine
Co-authored papers 2
Alvaro Martinez Barrio
Uppsala University
Co-authored papers 2
Noah Spies
Stanford University
Co-authored papers 2
Ian T Fiddes
Liver Center and Diabetes Center, University of California san francisco
Co-authored papers 2
Noushin Ghaffari
Prairie View A&M University
Co-authored papers 2
Adam C English
Baylor College of Medicine Human Genome Sequencing Center
Co-authored papers 2
Weichen Zhou
Chengdu First People's Hospital
Co-authored papers 2
Ken Chen
University of Texas MD Anderson Cancer Center
Co-authored papers 2
Ryan E Mills
University of Michigan Medical School ann arbor
Co-authored papers 2
Camir Ricketts
Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University
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