Author details

Full Name

Matthew E Johnson

Affiliation

Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37689782	Projecting genetic associations through gene expression patterns highlights disease etiology and drug mechanisms.	Nat Commun	2023
37584517	Integrative Genomic Analyses Identify LncRNA Regulatory Networks across Pediatric Leukemias and Solid Tumors.	Cancer Res	2023
35659055	Implicating effector genes at COVID-19 GWAS loci using promoter-focused Capture-C in disease-relevant immune cell types.	Genome Biol	2022
35537191	Variant-to-gene-mapping analyses reveal a role for pancreatic islet cells in conferring genetic susceptibility to sleep-related traits.	Sleep	2022
33069917	Variant-to-Gene-Mapping Analyses Reveal a Role for the Hypothalamus in Genetic Susceptibility to Inflammatory Bowel Disease.	Cell Mol Gastroenterol Hepatol	2021
33545232	3D promoter architecture re-organization during iPSC-derived neuronal cell differentiation implicates target genes for neurodevelopmental disorders.	Prog Neurobiol	2021
34799566	Cis-regulatory architecture of human ESC-derived hypothalamic neuron differentiation aids in variant-to-gene mapping of relevant complex traits.	Nat Commun	2021
34532616	CRISPR-Cas9-Mediated Genome Editing Confirms <i>EPDR1</i> as an Effector Gene at the BMD GWAS-Implicated '<i>STARD3NL</i>' Locus.	JBMR Plus	2021
34343493	A UVB-responsive common variant at chromosome band 7p21.1 confers tanning response and melanoma risk via regulation of the aryl hydrocarbon receptor, AHR.	Am J Hum Genet	2021
33459256	Biological constraints on GWAS SNPs at suggestive significance thresholds reveal additional BMI loci.	Elife	2021
33397451	Genome-wide association study implicates novel loci and reveals candidate effector genes for longitudinal pediatric bone accrual.	Genome Biol	2021
32535942	Canonical Notch signaling is required for bone morphogenetic protein-mediated human osteoblast differentiation.	Stem Cells	2020
32778141	An evolutionary driver of interspersed segmental duplications in primates.	Genome Biol	2020
32620744	Mapping effector genes at lupus GWAS loci using promoter Capture-C in follicular helper T cells.	Nat Commun	2020
30890710	Genome-scale Capture C promoter interactions implicate effector genes at GWAS loci for bone mineral density.	Nat Commun	2019
31264971	T follicular helper cells in human efferent lymph retain lymphoid characteristics.	J Clin Invest	2019
29150566	The Loss of TET2 Promotes CD8<sup>+</sup> T Cell Memory Differentiation.	J Immunol	2018
30392958	Distinct Regulation of Th17 and Th1 Cell Differentiation by Glutaminase-Dependent Metabolism.	Cell	2018
29797095	Leveraging epigenomics and contactomics data to investigate SNP pairs in GWAS.	Hum Genet	2018
27539148	The type 2 diabetes presumed causal variant within TCF7L2 resides in an element that controls the expression of ACSL5.	Diabetologia	2016
24667787	Characterization of the transcriptional machinery bound across the widely presumed type 2 diabetes causal variant, rs7903146, within TCF7L2.	Eur J Hum Genet	2015
25567984	DNA binding by FOXP3 domain-swapped dimer suggests mechanisms of long-range chromosomal interactions.	Nucleic Acids Res	2015
24337390	A ChIP-seq-defined genome-wide map of MEF2C binding reveals inflammatory pathways associated with its role in bone density determination.	Calcif Tissue Int	2014
25469308	Two novel type 2 diabetes loci revealed through integration of TCF7L2 DNA occupancy and SNP association data.	BMJ Open Diabetes Res Care	2014
24878043	Genome-wide analyses of ChIP-Seq derived FOXA2 DNA occupancy in liver points to genetic networks underpinning multiple complex traits.	J Clin Endocrinol Metab	2014
24719615	Genetic susceptibility to type 2 diabetes and obesity: follow-up of findings from genome-wide association studies.	Int J Endocrinol	2014
23276256	A specific family of interspersed repeats (SINEs) facilitates meiotic synapsis in mammals.	Mol Cytogenet	2013
17101969	Recurrent duplication-driven transposition of DNA during hominoid evolution.	Proc Natl Acad Sci U S A	2006
15737067	Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans.	PLoS Biol	2005
11586358	Positive selection of a gene family during the emergence of humans and African apes.	Nature	2001
11948212	Divergent origins and concerted expansion of two segmental duplications on chromosome 16.	J Hered	2001

1 - 31 of 31

Yunjiang Qiu

Ludwig Institute for Cancer Research, University of California

Career Start Year 2015

Number of shared co-authors 2

Kimberly A Nevonen

Knight Cardiovascular Institute, Oregon Health and Science University

Career Start Year 2014

Number of shared co-authors 4

Alan P Boyle

University of Michigan ann arbor

Career Start Year 2008

Number of shared co-authors 4

Venkat S Malladi

UT Southwestern Medical Center

Career Start Year 2008

Number of shared co-authors 4

Swneke D Bailey

Research Institute of the McGill University Health Centre

Career Start Year 2006

Number of shared co-authors 3

Stephen C J Parker

University of Michigan ann arbor

Career Start Year 2006

Number of shared co-authors 5

David L Corcoran

The University of North Carolina at Chapel Hill

Career Start Year 2005

Number of shared co-authors 1

James G D Prendergast

The Roslin Institute, The University of Edinburgh

Career Start Year 2005

Number of shared co-authors 1

Shyam Prabhakar

Genome Institute of Singapore (GIS)

Career Start Year 2004

Number of shared co-authors 1

Matthew T Weirauch

University of Cincinnati College of Medicine

Career Start Year 2003

Number of shared co-authors 12

Eric Haugen

Altius Institute for Biomedical Sciences

Career Start Year 2003

Number of shared co-authors 9

Manolis Kellis

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 11

John A Capra

Bakar Computational Health Sciences Institute, University of California san francisco

Career Start Year 2003

Number of shared co-authors 6

Tarjei S Mikkelsen

Harvard University, USA Broad Institute, USA Harvard Stem Cell Institute

Career Start Year 2001

Number of shared co-authors 5

Michael D Wilson

SickKids Research Institute

Career Start Year 2000

Number of shared co-authors 0

Martin S Taylor

Institute of Genetics and Cancer, University of Edinburgh

Career Start Year 2000

Number of shared co-authors 6

Terrence S Furey

University of North Carolina at Chapel Hill

Career Start Year 2000

Number of shared co-authors 9

Duncan T Odom

Cancer Research UK Cambridge Institute, University of Cambridge

Career Start Year 1999

Number of shared co-authors 5

Gregory E Crawford

Center for Genomic & Computational Biology, Duke University

Career Start Year 1999

Number of shared co-authors 5

Nadav Ahituv

University of California san francisco

Career Start Year 1998

Number of shared co-authors 2

Guillaume Bourque

Institute for the Advanced Study of Human Biology (ASHBi), Kyoto University

Career Start Year 1997

Number of shared co-authors 7

Colin A Semple

Institute of Genetics and Cancer, University of Edinburgh

Career Start Year 1997

Number of shared co-authors 1

Laura Elnitski

National Human Genome Research Institute

Career Start Year 1997

Number of shared co-authors 7

Peter C Scacheri

Case Western Reserve University School of Medicine

Career Start Year 1995

Number of shared co-authors 3

Devin Absher

Kaiser Permanente Research Bank

Career Start Year 1994

Number of shared co-authors 13

John A Stamatoyannopoulos

Altius Institute for Biomedical Sciences

Career Start Year 1992

Number of shared co-authors 8

Panos Deloukas

William Harvey Research Institute, Queen Mary University of London

Career Start Year 1992

Number of shared co-authors 13

Eric S Lander

Vanderbilt-Ingram Cancer Center, Vanderbilt University

Career Start Year 1986

Number of shared co-authors 14

Richard M Myers

HudsonAlpha Institute for Biotechnology

Career Start Year 1980

Number of shared co-authors 11

Kelly A Frazer

University of California, USA Institute for Genomic Medicine

Career Start Year 1967

Number of shared co-authors 7

row(s) 1 - 30 of 30

Struan F A Grant

Center for Spatial and Functional Genomics, The Children's Hospital of Philadelphia

Co-authored papers 22

Andrew D Wells

Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia

Co-authored papers 20

Alessandra Chesi

Center for Spatial and Functional Genomics, The Children's Hospital of Philadelphia

Co-authored papers 14

Sumei Lu

China National Center for Biotechnology Development

Co-authored papers 11

James A Pippin

Center for Spatial and Functional Genomics, The Children's Hospital of Philadelphia

Co-authored papers 10

Michelle E Leonard

The Children's Hospital of Philadelphia

Co-authored papers 9

Matthew C Pahl

Center for Spatial and Functional Genomics, The Children's Hospital of Philadelphia

Co-authored papers 8

Elisabetta Manduchi

Center for Spatial and Functional Genomics, Children's Hospital of Philadelphia

Co-authored papers 6

Kurt D Hankenson

University of Michigan School of Medicine ann arbor

Co-authored papers 6

Evan E Eichler

University of Washington

Co-authored papers 5

Diana L Cousminer

Children's Hospital of Philadelphia

Co-authored papers 5

Yadav Wagley

Department of Orthopedic Surgery University of Michigan Medical School Ann Arbor

Co-authored papers 5

Benjamin F Voight

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 3

Klaus H Kaestner

Department of Genetics and Institute for Diabetes, University of Pennsylvania

Co-authored papers 3

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 2

Jonathan Schug

University of Pennsylvania Perelman School of Medicine

Co-authored papers 2

Nicholas P Restifo

National Cancer Institute, National Institutes of Health (NIH)

Co-authored papers 1

Jinghui Zhang

Changhai Hospital, Second Military Medical University

Co-authored papers 1

Shana E McCormack

The Children's Hospital of Philadelphia Division of Endocrinology and Diabetes