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Author Details

Tapio Salakoski
University of Turku
1992
53
16
PMIDPaper TitleJournal TitlePublished Year
33306472Neural Network and Random Forest Models in Protein Function Prediction.IEEE/ACM Trans Comput Biol Bioinform2022
35612225Clustering Nursing Sentences - Comparing Three Sentence Embedding Methods.Stud Health Technol Inform2022
35673093Text Classification Model Explainability for Keyword Extraction - Towards Keyword-Based Summarization of Nursing Care Episodes.Stud Health Technol Inform2022
34003504Artificial intelligence in nursing: Priorities and opportunities from an international invitational think-tank of the Nursing and Artificial Intelligence Leadership Collaborative.J Adv Nurs2021
31605490Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods.J Am Med Inform Assoc2020
32873340Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings.J Biomed Semantics2020
30589139Pain process of patients with cardiac surgery-Semantic annotation of electronic patient record data.J Clin Nurs2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
31438226Unsupervised Phrase-Level Query Rewriting for Assisting Search in Clinical Free Text.Stud Health Technol Inform2019
30554532Secondary use of electronic health records: Availability aspects in two Nordic countries.Health Inf Manag2019
29652677Ontology Development for Patient Education Documents Using a Professional- and Patient-Oriented Delphi Method.Comput Inform Nurs2018
30239666Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling.Database (Oxford)2018
30576487Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction.Database (Oxford)2018
29678056Improving Layman Readability of Clinical Narratives with Unsupervised Synonym Replacement.Stud Health Technol Inform2018
28764102Assessment of metal ion concentration in water with structured feature selection.Chemosphere2017
26900011Comparison of automatic summarisation methods for clinical free text notes.Artif Intell Med2016
27604469An expanded evaluation of protein function prediction methods shows an improvement in accuracy.Genome Biol2016
26099735Care episode retrieval: distributional semantic models for information retrieval in the clinical domain.BMC Med Inform Decis Mak2015
26551925TEES 2.2: Biomedical Event Extraction for Diverse Corpora.BMC Bioinformatics2015
26551766Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis.BMC Bioinformatics2015
24726853Predicting patient acuity from electronic patient records.J Biomed Inform2014
25244327Multiple different defense mechanisms are activated in the young transgenic tobacco plants which express the full length genome of the Tobacco mosaic virus, and are resistant against this virus.PLoS One2014
25393026Regularized machine learning in the genetic prediction of complex traits.PLoS Genet2014
24680097Statistical parsing of varieties of clinical Finnish.Artif Intell Med2014
23353650A large-scale evaluation of computational protein function prediction.Nat Methods2013
23613707Large-scale event extraction from literature with multi-level gene normalization.PLoS One2013
22551170Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations.Algorithms Mol Biol2012
22759460Semantically linking molecular entities in literature through entity relationships.BMC Bioinformatics2012
22759458University of Turku in the BioNLP'11 Shared Task.BMC Bioinformatics2012
22719757Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations.Adv Bioinformatics2012
22177292U-Compare bio-event meta-service: compatible BioNLP event extraction services.BMC Bioinformatics2011
20529932Complex event extraction at PubMed scale.Bioinformatics2010
21355504Accuracy of protein hydropathy predictions.Int J Data Min Bioinform2010
19299195Towards automated processing of clinical Finnish: sublanguage analysis and a rule-based parser.Int J Med Inform2009
19592833Evaluating pain in intensive care.Stud Health Technol Inform2009
19328036Combining hidden Markov models and latent semantic analysis for topic segmentation and labeling: method and clinical application.Int J Med Inform2009
18426551Comparative analysis of five protein-protein interaction corpora.BMC Bioinformatics2008
19025688All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning.BMC Bioinformatics2008
18294709Tissue-specific expression of aryl hydrocarbon receptor and putative developmental regulatory modules in Baltic salmon yolk-sac fry.Aquat Toxicol2008
18289772Detecting biological associations between genes based on the theory of phase synchronization.Biosystems2008
17513166Towards automated classification of intensive care nursing narratives.Int J Med Inform2007
17604685Applying language technology to nursing documents: pros and cons with a focus on ethics.Int J Med Inform2007
17291334BioInfer: a corpus for information extraction in the biomedical domain.BMC Bioinformatics2007
16099201Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactions.Int J Med Inform2006
17108610Towards automated classification of intensive care nursing narratives.Stud Health Technol Inform2006
17102280Theoretical considerations of ethics in text mining of nursing documents.Stud Health Technol Inform2006
17134475Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches.BMC Bioinformatics2006
15972097Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation.BMC Bioinformatics2005
12542244Mobile access to biological databases on the Internet.IEEE Trans Biomed Eng2002
11590108BioWAP, mobile Internet service for bioinformatics.Bioinformatics2001
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Collaborators

Filip Ginter
University of Turku
Co-authored papers 23
Sanna Salanter??
60654University of Turku
Co-authored papers 19
Jari Bj??rne
University of Turku
Co-authored papers 13
Hans Moen
Aalto University
Co-authored papers 11
Tapio Pahikkala
University of Turku
Co-authored papers 10
Kai Hakala
University of Turku
Co-authored papers 9
Antti Airola
University of Turku
Co-authored papers 8
Mauno Vihinen
Lund University
Co-authored papers 6
Hanna Suominen
Australian National University, University of Turku
Co-authored papers 6
Suwisa Kaewphan
University of Turku
Co-authored papers 4
Farrokh Mehryary
University of Turku
Co-authored papers 4
Prajwal Bhat
Royal Holloway University of London
Co-authored papers 3
Paolo Fontana
San Pio Hospital
Co-authored papers 3
Predrag Radivojac
Indiana University
Co-authored papers 3
Fran Supek
Catalan Institution for Research and Advanced Studies (ICREA)
Co-authored papers 3
Haixuan Yang
University of Galway
Co-authored papers 3
Sean D Mooney
University of Washington
Co-authored papers 3
Hai Fang
University of Bristol
Co-authored papers 3
Stefano Toppo
University of Padova
Co-authored papers 3
Patricia C Babbitt
University of California san francisco
Co-authored papers 3
Asa Ben-Hur
Colorado State University
Co-authored papers 3
Michal Linial
Institute of Life Sciences, The Hebrew University of Jerusalem
Co-authored papers 3
Karin Verspoor
National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre
Co-authored papers 3
Daisuke Kihara
Purdue University
Co-authored papers 3
Iddo Friedberg
Iowa State University
Co-authored papers 3
David T Jones
University College London
Co-authored papers 3
Steven E Brenner
University of California berkeley
Co-authored papers 3
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 3
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 3
Domenico Cozzetto
Imperial College London
Co-authored papers 3
Release 1.2