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Author Details

Sebasti??n Ch??vez
Universidad de Sevilla
1991
81
31
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36731791Enhanced gene regulation by cooperation between mRNA decay and gene transcription.Biochim Biophys Acta Gene Regul Mech2023
35907432Nucleo-cytoplasmic shuttling of RNA-binding factors: mRNA buffering and beyond.Biochim Biophys Acta Gene Regul Mech2022
33138675Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration.RNA Biol2021
34272303The total mRNA concentration buffering system in yeast is global rather than gene-specific.RNA2021
34263006Transcriptional Run-on: Measuring Nascent Transcription at Specific Genomic Sites in Yeast.Bio Protoc2021
32344577Overexpression of Canonical Prefoldin Associates with the Risk of Mortality and Metastasis in Non-Small Cell Lung Cancer.Cancers (Basel)2020
31418631Homeostasis in the Central Dogma of molecular biology: the importance of mRNA instability.RNA Biol2019
31392315The mRNA degradation factor Xrn1 regulates transcription elongation in parallel to Ccr4.Nucleic Acids Res2019
29022131Feedback regulation of ribosome assembly.Curr Genet2018
30484149Functional Contributions of Prefoldin to Gene Expression.Adv Exp Med Biol2018
29580382High levels of histones promote whole-genome-duplications and trigger a Swe1<sup>WEE1</sup>-dependent phosphorylation of Cdc28<sup>CDK1</sup>.Elife2018
29133017Rpb5 modulates the RNA polymerase II transition from initiation to elongation by influencing Spt5 association and backtracking.Biochim Biophys Acta Gene Regul Mech2018
27875711Corrigendum to "External conditions inversely change the RNA polymerase II elongation rate and density in yeast" [Biochim. Biophys. Acta 1829/11 (2013) 1248-1255].Biochim Biophys Acta Gene Regul Mech2017
29155810Regulation of transcription elongation in response to osmostress.PLoS Genet2017
29069448Asymmetric cell division requires specific mechanisms for adjusting global transcription.Nucleic Acids Res2017
29212533Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning.Epigenetics Chromatin2017
28637236The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation.Nucleic Acids Res2017
27007479The importance of controlling mRNA turnover during cell proliferation.Curr Genet2016
27648972Growth rate controls mRNA turnover in steady and non-steady states.RNA Biol2016
26717982The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons.Nucleic Acids Res2016
25550430Chromatin-dependent regulation of RNA polymerases II and III activity throughout the transcription cycle.Nucleic Acids Res2015
25813039H3K4 monomethylation dictates nucleosome dynamics and chromatin remodeling at stress-responsive genes.Nucleic Acids Res2015
25769980Cis- and trans-regulatory mechanisms of gene expression in the ASJ sensory neuron of Caenorhabditis elegans.Genetics2015
24567736Cytoplasmic 5'-3' exonuclease Xrn1p is also a genome-wide transcription factor in yeast.Front Genet2014
25239104Flow cytometry of microencapsulated colonies for genetics analysis of filamentous fungi.G3 (Bethesda)2014
25008233Nuclear functions of prefoldin.Open Biol2014
25081216The yeast prefoldin-like URI-orthologue Bud27 associates with the RSC nucleosome remodeler and modulates transcription.Nucleic Acids Res2014
23467123Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression.J Mol Biol2013
24105897What do you mean by transcription rate?: the conceptual difference between nascent transcription rate and mRNA synthesis rate is essential for the proper understanding of transcriptomic analyses.Bioessays2013
24103494External conditions inversely change the RNA polymerase II elongation rate and density in yeast.Biochim Biophys Acta2013
24043628Balanced production of ribosome components is required for proper G1/S transition in Saccharomyces cerevisiae.J Biol Chem2013
24068951The prefoldin complex regulates chromatin dynamics during transcription elongation.PLoS Genet2013
24260565A genome-wide screen identifies yeast genes required for tolerance to technical toxaphene, an organochlorinated pesticide mixture.PLoS One2013
23706738Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis.Cell2013
22182827Genome-wide studies of mRNA synthesis and degradation in eukaryotes.Biochim Biophys Acta2012
22819814One step back before moving forward: regulation of transcription elongation by arrest and backtracking.FEBS Lett2012
22544605TFIIS is required for the balanced expression of the genes encoding ribosomal components under transcriptional stress.Nucleic Acids Res2012
22456320The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast.Transcription2012
22567399Gene Control during Transcription Elongation.Genet Res Int2012
22160893A matter of packaging: influence of nucleosome positioning on heterologous gene expression.Methods Mol Biol2012
21270164Chromatin reassembly factors are involved in transcriptional interference promoting HIV latency.J Virol2011
20385590The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors.Nucleic Acids Res2010
21103382A complete set of nascent transcription rates for yeast genes.PLoS One2010
20502685FACT prevents the accumulation of free histones evicted from transcribed chromatin and a subsequent cell cycle delay in G1.PLoS Genet2010
19197357Genome-wide analysis of factors affecting transcription elongation and DNA repair: a new role for PAF and Ccr4-not in transcription-coupled repair.PLoS Genet2009
19696888Regulon-specific control of transcription elongation across the yeast genome.PLoS Genet2009
19148280Yeast genetic analysis reveals the involvement of chromatin reassembly factors in repressing HIV-1 basal transcription.PLoS Genet2009
19153600Recruitment of a chromatin remodelling complex by the Hog1 MAP kinase to stress genes.EMBO J2009
17960421Different physiological relevance of yeast THO/TREX subunits in gene expression and genome integrity.Mol Genet Genomics2008
18923079Sus1 is recruited to coding regions and functions during transcription elongation in association with SAGA and TREX2.Genes Dev2008
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Collaborators

Gonzalo Mill??n-Zambrano
Universidad de Sevilla-CSIC-Universidad Pablo de Olavide
Co-authored papers 10
Alfonso Rodr??guez-Gil
Instituto de Biomedicina de Sevilla, Universidad de Sevilla
Co-authored papers 9
Xenia Pe??ate
Universidad de Sevilla
Co-authored papers 9
Macarena Morillo-Huesca
CSIC-University of Seville-University Pablo de Olavide
Co-authored papers 6
Lola de Miguel-Jim??nez
Co-authored papers 6
Eul??lia de Nadal
Universitat Pompeu Fabra
Co-authored papers 3
Francesc Posas
Universitat Pompeu Fabra
Co-authored papers 3
Gloria Mas
Sylvester Comprehensive Cancer Center and.
Co-authored papers 2
Lars M Steinmetz
Stanford University
Co-authored papers 2
Carme Sol??
Universitat Pompeu Fabra (UPF)
Co-authored papers 2
Ren?? B??ttcher
Universitat Pompeu Fabra
Co-authored papers 1
Daniel Schaft
Technische Universitaet Dresden
Co-authored papers 1
Thanasis Margaritis
Princess Maxima Center for Pediatric Oncology
Co-authored papers 1
Lluis Montoliu
National Centre for Biotechnology (CNB-CSIC)
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Manuel Garber
Co-authored papers 1
Jesper Q Svejstrup
Panum Institute, University of Copenhagen
Co-authored papers 1
Assen Roguev
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 1
Anna Shevchenko
Max Plank Institute of Molecular Cell Biology and Genetics
Co-authored papers 1
Hediye Erdjument-Bromage
Neuroscience Institute, NYU Grossman School of Medicine
Co-authored papers 1
Rapha??l Guerois
Universite Paris-Saclay, CNRS, Institute for Integrative Biology of the Cell
Co-authored papers 1
Colin Logie
Radboud Institute for Molecular Science, Radboud University
Co-authored papers 1
Frank C P Holstege
Princess Maxima Center for Pediatric Oncology
Co-authored papers 1
Rosa Luna
Co-authored papers 1
Adrian Francis Stewart
Center for Molecular and Cellular Bioengineering, Technische Universitat Dresden
Co-authored papers 1
Andrej Shevchenko
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 1
Mariona Nadal-Ribelles
Universitat Pompeu Fabra (UPF)
Co-authored papers 1
Alan G Hinnebusch
Eunice Kennedy Shriver National Institute of Child Health and Human Development
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Release 1.2