Author details

Full Name

Alexander Lachmann

Affiliation

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36869839	lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.	Database (Oxford)	2023
36874981	PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices.	PeerJ	2023
35085427	Getting Started with the IDG KMC Datasets and Tools.	Curr Protoc	2022
35524556	SigCom LINCS: data and metadata search engine for a million gene expression signatures.	Nucleic Acids Res	2022
35876555	Getting Started with LINCS Datasets and Tools.	Curr Protoc	2022
35183110	DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules.	BMC Bioinformatics	2022
35143610	blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation.	Bioinformatics	2022
32929263	Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses.	Nat Biotechnol	2021
34019655	KEA3: improved kinase enrichment analysis via data integration.	Nucleic Acids Res	2021
33748796	Appyters: Turning Jupyter Notebooks into data-driven web apps.	Patterns (N Y)	2021
33787872	Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning.	Database (Oxford)	2021
33780170	Gene Set Knowledge Discovery with Enrichr.	Curr Protoc	2021
32838343	The COVID-19 Drug and Gene Set Library.	Patterns (N Y)	2020
32368696	Systems Analysis Implicates WAVE2Â Complex in the Pathogenesis ofÂ Developmental Left-Sided ObstructiveÂ Heart Defects.	JACC Basic Transl Sci	2020
32243840	Memory of Divisional History Directs the Continuous Process of Primitive Hematopoietic Lineage Commitment.	Stem Cell Reports	2020
32277816	EnrichrBot: Twitter bot tracking tweets about human genes.	Bioinformatics	2020
32156561	Interoperable RNA-Seq analysis in the cloud.	Biochim Biophys Acta Gene Regul Mech	2020
31701147	LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.	Nucleic Acids Res	2020
32702729	The COVID-19 Gene and Drug Set Library.	Res Sq	2020
31114885	Geneshot: search engine for ranking genes from arbitrary text queries.	Nucleic Acids Res	2019
30594974	Mining data and metadata from the gene expression omnibus.	Biophys Rev	2019
31069376	modEnrichr: a suite of gene set enrichment analysis tools for model organisms.	Nucleic Acids Res	2019
31114921	ChEA3: transcription factor enrichment analysis by orthogonal omics integration.	Nucleic Acids Res	2019
29789295	Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks.	Sci Signal	2018
30447998	BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud.	Cell Syst	2018
30517869	Cooperative Transcription Factor Induction Mediates Hemogenic Reprogramming.	Cell Rep	2018
29485625	Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses.	Sci Data	2018
29636450	Massive mining of publicly available RNA-seq data from human and mouse.	Nat Commun	2018
29420694	L1000FWD: fireworks visualization of drug-induced transcriptomic signatures.	Bioinformatics	2018
29199020	The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.	Cell Syst	2018
29800326	eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.	Nucleic Acids Res	2018
29023443	Systematic, network-based characterization of therapeutic target inhibitors.	PLoS Comput Biol	2017
27526204	Polycomb repressive complex 2 (PRC2) silences genes responsible for neurodegeneration.	Nat Neurosci	2016
27153732	Detection and removal of spatial bias in multiwell assays.	Bioinformatics	2016
27153652	ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information.	Bioinformatics	2016
27141961	Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.	Nucleic Acids Res	2016
27322546	Functional characterization of somatic mutations in cancer using network-based inference of protein activity.	Nat Genet	2016
22235275	Receptor heteromerization expands the repertoire of cannabinoid signaling in rodent neurons.	PLoS One	2012
21349871	FNV: light-weight flash-based network and pathway viewer.	Bioinformatics	2011
21552464	Inferring the Sign of Kinase-Substrate Interactions by Combining Quantitative Phosphoproteomics with a Literature-Based Mammalian Kinome Network.	Proc IEEE Int Symp Bioinformatics Bioeng	2010
20686112	Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR).	Proc Natl Acad Sci U S A	2010
20709693	ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments.	Bioinformatics	2010
19892805	GATE: software for the analysis and visualization of high-dimensional time series expression data.	Bioinformatics	2010
20152038	Lists2Networks: integrated analysis of gene/protein lists.	BMC Bioinformatics	2010
19924215	Systems-level dynamic analyses of fate change in murine embryonic stem cells.	Nature	2009
19176546	KEA: kinase enrichment analysis.	Bioinformatics	2009