Author details

Full Name

James Geller

Affiliation

New Jersey Institute of Technology

ORCID

Career Start Year

1996

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36829139	Mining of EHR for interface terminology concepts for annotating EHRs of COVID patients.	BMC Med Inform Decis Mak	2023
34224898	Visual comprehension and orientation into the COVID-19 CIDO ontology.	J Biomed Inform	2021
33936421	Desiderata for High Quality AMIA Presentation Files.	AMIA Annu Symp Proc	2021
32308894	Training a Convolutional Neural Network with Terminology Summarization Data Improves SNOMED CT Enrichment.	AMIA Annu Symp Proc	2020
33098987	Concept placement using BERT trained by transforming and summarizing biomedical ontology structure.	J Biomed Inform	2020
33319713	Outlier concepts auditing methodology for a large family of biomedical ontologies.	BMC Med Inform Decis Mak	2020
33319709	Missing lateral relationships in top-level concepts of an ontology.	BMC Med Inform Decis Mak	2020
33319702	Extending import detection algorithms for concept import from two to three biomedical terminologies.	BMC Med Inform Decis Mak	2020
32308910	Transfer Learning from BERT to Support Insertion of New Concepts into SNOMED CT.	AMIA Annu Symp Proc	2020
31048072	Alternative classification of identical concepts in different terminologies: Different ways to view the world.	J Biomed Inform	2019
30815087	How Sustainable are Biomedical Ontologies?	AMIA Annu Symp Proc	2018
30205171	Quality assurance of biomedical terminologies and ontologies.	J Biomed Inform	2018
29852316	Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies.	J Biomed Inform	2018
30854243	Extended Analysis of Topological-Pattern-Based Ontology Enrichment.	Proceedings (IEEE Int Conf Bioinformatics Biomed)	2018
30815158	Overlapping Complex Concepts Have More Commission Errors, Especially in Intensive Terminology Auditing.	AMIA Annu Symp Proc	2018
30815117	Using Convolutional Neural Networks to Support Insertion of New Concepts into SNOMED CT.	AMIA Annu Symp Proc	2018
30815106	Leveraging Horizontal Density Differences between Ontologies to Identify Missing Child Concepts: A Proof of Concept.	AMIA Annu Symp Proc	2018
27750400	Introducing the Big Knowledge to Use (BK2U) challenge.	Ann N Y Acad Sci	2017
28269858	Topological-Pattern-Based Recommendation of UMLS Concepts for National Cancer Institute Thesaurus.	AMIA Annu Symp Proc	2017
29375930	Auditing the Assignments of Top-Level Semantic Types in the UMLS Semantic Network to UMLS Concepts.	Proceedings (IEEE Int Conf Bioinformatics Biomed)	2017
29295246	Summarizing an Ontology: A "Big Knowledge" Coverage Approach.	Stud Health Technol Inform	2017
29295222	Perceiving the Usefulness of the National Cancer Institute Metathesaurus for Enriching NCIt with Topological Patterns.	Stud Health Technol Inform	2017
28723580	Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology.	J Biomed Inform	2017
28583809	An empirical analysis of ontology reuse in BioPortal.	J Biomed Inform	2017
26988001	Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies.	J Biomed Inform	2016
27301779	Quality assurance of the gene ontology using abstraction networks.	J Bioinform Comput Biol	2016
27345947	A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies.	J Biomed Inform	2016
27577431	Expansion of the Hierarchical Terminology Auditing Framework Through Usage of Levenshtein Distance-Based Criterion.	Stud Health Technol Inform	2016
27577410	Preliminary Analysis of Difficulty of Importing Pattern-Based Concepts into the National Cancer Institute Thesaurus.	Stud Health Technol Inform	2016
25332354	A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships.	J Am Med Inform Assoc	2015
32226558	Twitter sentiment classification for measuring public health concerns.	Soc Netw Anal Min	2015
26958234	Drug-drug Interaction Discovery Using Abstraction Networks for "National Drug File - Reference Terminology" Chemical Ingredients.	AMIA Annu Symp Proc	2015
26048076	Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network.	J Biomed Inform	2015
25890688	A comparative analysis of the density of the SNOMED CT conceptual content for semantic harmonization.	Artif Intell Med	2015
25991116	Auditing of SNOMED CT's Hierarchical Structure using the National Drug File - Reference Terminology.	Stud Health Technol Inform	2015
25336594	Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies.	J Am Med Inform Assoc	2015
24928653	Mapping biological entities using the longest approximately common prefix method.	BMC Bioinformatics	2014
25717400	Categorizing the Relationships between Structurally Congruent Concepts from Pairs of Terminologies for Semantic Harmonization.	AMIA Jt Summits Transl Sci Proc	2014
25422719	Sculpting the UMLS Refined Semantic Network.	Online J Public Health Inform	2014
23041716	Rule-based support system for multiple UMLS semantic type assignments.	J Biomed Inform	2013
24551393	Scalability of abstraction-network-based quality assurance to large SNOMED hierarchies.	AMIA Annu Symp Proc	2013
24551360	A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal.	AMIA Annu Symp Proc	2013
21925287	Overcoming an obstacle in expanding a UMLS semantic type extent.	J Biomed Inform	2012
23304341	Deriving an abstraction network to support quality assurance in OCRe.	AMIA Annu Symp Proc	2012
23304293	New abstraction networks and a new visualization tool in support of auditing the SNOMED CT content.	AMIA Annu Symp Proc	2012
22687822	A study of terminology auditors' performance for UMLS semantic type assignments.	J Biomed Inform	2012
21878396	Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED.	J Biomed Inform	2012
21836159	A survey of SNOMED CT direct users, 2010: impressions and preferences regarding content and quality.	J Am Med Inform Assoc	2011
20815139	Detecting duplicate biological entities using Shortest Path Edit Distance.	Int J Data Min Bioinform	2010
21347068	Shortest Path Edit Distance for Enhancing UMLS Integration and Audit.	AMIA Annu Symp Proc	2010

1 - 50 of 86

Rashmie Abeysinghe

McGovern Medical School, The University of Texas Health Science Center at Houston

Career Start Year 2017

Number of shared co-authors 3

Alejandro Rodr??guez-Gonz??lez

Centro de Tecnologia Biomedica. Universidad Politecnica de Madrid

Career Start Year 2012

Number of shared co-authors 0

Vianney Jouhet

Harvard Medical School

Career Start Year 2009

Number of shared co-authors 0

Csongor Nyulas

Stanford University

Career Start Year 2008

Number of shared co-authors 4

Ernesto Jim??nez-Ruiz

City University of London

Career Start Year 2008

Number of shared co-authors 4

Bridget T McInnes

Virginia Commonwealth University

Career Start Year 2007

Number of shared co-authors 0

Mathias Brochhausen

College of Medicine, University of Arkansas for Medical Sciences

Career Start Year 2006

Number of shared co-authors 6

Karin Verspoor

National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre

Career Start Year 2005

Number of shared co-authors 1

Daniel Schober

Institute of Forensic Medicine, University of Bern

Career Start Year 2005

Number of shared co-authors 4

Jesualdo Tom??s Fern??ndez-Breis

Universidad de Murcia

Career Start Year 2004

Number of shared co-authors 1

Vipul Kashyap

ICAR-National Dairy Research Institute

Career Start Year 2003

Number of shared co-authors 0

Barry Smith

University at Buffalo

Career Start Year 2003

Number of shared co-authors 9

Dietrich Rebholz-Schuhmann

University of Cologne

Career Start Year 2003

Number of shared co-authors 1

Guoqian Jiang

Mayo Clinic Rochester Minnesota USA.

Career Start Year 2002

Number of shared co-authors 1

Cui Tao

The University of Texas Health Science Center at Houston

Career Start Year 2002

Number of shared co-authors 8

Anand Kumar

Queens Medical Centre, Nottingham University Hospital NHS Trust

Career Start Year 2002

Number of shared co-authors 2

Hongfang Liu

Mayo Clinic

Career Start Year 1999

Number of shared co-authors 6

Harold R Solbrig

Johns Hopkins University

Career Start Year 1998

Number of shared co-authors 10

Stefan Schulz

Institute for Medical Informatics, Medical University of Graz

Career Start Year 1997

Number of shared co-authors 3

Udo Hahn

Friedrich Schiller University Jena

Career Start Year 1995

Number of shared co-authors 0

Steven H Brown

Vanderbilt University Medical Center

Career Start Year 1994

Number of shared co-authors 0

Olivier Bodenreider

National Institutes of Health

Career Start Year 1993

Number of shared co-authors 4

Martin Boeker

Institute of AI and Informatics in Medicine, Technical University of Munich

Career Start Year 1992

Number of shared co-authors 1

Keith E Campbell

Stanford University School of Medicine

Career Start Year 1992

Number of shared co-authors 3

Alexa T McCray

Columbia University in the City of New York.

Career Start Year 1990

Number of shared co-authors 1

Carol Friedman

Columbia University

Career Start Year 1990

Number of shared co-authors 2

Werner Ceusters

University at Buffalo

Career Start Year 1987

Number of shared co-authors 3

Christopher G Chute

Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota

Career Start Year 1985

Number of shared co-authors 13

Mark S Tuttle

Apelon Inc.

Career Start Year 1980

Number of shared co-authors 4

Alan Rector

University of Manchester

Career Start Year 1975

Number of shared co-authors 5

row(s) 1 - 30 of 30

Yehoshua Perl

New Jersey Institute of Technology

Co-authored papers 66

Christopher Ochs

New Jersey Institute of Technology, University Heights

Co-authored papers 18

Gai Elhanan

NV Center for Genomic Medicine, Desert Research Institute

Co-authored papers 16

James J Cimino

Informatics Institute, University of Alabama

Co-authored papers 12

George Hripcsak

Columbia University

Co-authored papers 9

Hao Liu

Columbia University Irving Medical Center

Co-authored papers 7

Mark A Musen

Stanford Center for Biomedical Informatics Research, Stanford University

Co-authored papers 5

Min Song

Yonsei University

Co-authored papers 3

Samson W Tu

Stanford University

Co-authored papers 2

Natalya F Noy

Stanford Center for Biomedical Informatics Research, Stanford University

Co-authored papers 2

Sivaram Arabandi

Ontopro LLC

Co-authored papers 2

Jane Lomax

Wellcome Sanger Institute

Co-authored papers 1

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 1

Kent A Spackman

Oregon Health & Science University

Co-authored papers 1

Melissa A Haendel

Co-authored papers 1

Kaustubh Supekar

Stanford University School of Medicine, California Wu Tsai Neurosciences Institute

Co-authored papers 1

Matthew H Brush

University of Colorado Anschutz Medical Campus

Co-authored papers 1