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Author Details

Ferenc M??ller
University of Birmingham
1992
97
35
PMIDPaper TitleJournal TitlePublished Year
36693321The miR-430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation.Dev Cell2023
37529920Zebrafish regulatory genomic resources for disease modelling and regeneration.Dis Model Mech2023
38076793RNA polymerase II transcription with partially assembled TFIID complexes.bioRxiv2023
37996663Intra-promoter switch of transcription initiation sites in proliferation signaling-dependent RNA metabolism.Nat Struct Mol Biol2023
37574371Transcription factor IID parks and drives preinitiation complexes at sharp or broad promoters.Trends Biochem Sci2023
35970556CMTr mediated 2'-<i>O</i>-ribose methylation status of cap-adjacent nucleotides across animals.RNA2022
35789323Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.Nat Genet2022
34811400Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics.Sci Rep2021
33651978Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization.Dev Cell2021
33638993A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates.Nucleic Acids Res2021
33606232Visualization of Transcriptional Activity in Early Zebrafish Primordial Germ Cells.Methods Mol Biol2021
32268280Ancestrally Duplicated Conserved Noncoding Element Suggests Dual Regulatory Roles of HOTAIR in cis and trans.iScience2020
31924754Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing.Nat Commun2020
33353944TBPL2/TFIIA complex establishes the maternal transcriptome through oocyte-specific promoter usage.Nat Commun2020
32831299Using Tg(Vtg1:mcherry) Zebrafish Embryos to Test the Estrogenic Effects of Endocrine Disrupting Compounds.J Vis Exp2020
32619237Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic-associated core promoter regulation.Nucleic Acids Res2020
30482917Publisher Correction: Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease.Nat Neurosci2019
30741925A cell cycle-coordinated Polymerase II transcription compartment encompasses gene expression before global genome activation.Nat Commun2019
30737702A Method for Zebrafish Follicle Transplantation into Recipient Mothers for the Generation of Fertilizable Eggs and Viable Offspring.Methods Mol Biol2019
30677711Estrogen sensitive liver transgenic zebrafish (Danio rerio) line (Tg(vtg1:mCherry)) suitable for the direct detection of estrogenicity in environmental samples.Aquat Toxicol2019
29486070Expression and activity profiling of the steroidogenic enzymes of glucocorticoid biosynthesis and the fdx1 co-factors in zebrafish.J Neuroendocrinol2018
30224808Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease.Nat Neurosci2018
30031755Cellular rearrangement of the prechordal plate contributes to eye degeneration in the cavefish.Dev Biol2018
30404778SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA.Genome Res2018
30551672Enhancer Trapping and Annotation in Zebrafish Mediated with Sleeping Beauty, piggyBac and Tol2 Transposons.Genes (Basel)2018
30266295Glucocorticoid deficiency causes transcriptional and post-transcriptional reprogramming of glutamine metabolism.EBioMedicine2018
28938470Genetic Disruption of 21-Hydroxylase in Zebrafish Causes Interrenal Hyperplasia.Endocrinology2017
26859625Fish from Head to Tail: The 9th European Zebrafish Meeting in Oslo.Zebrafish2016
26650568Ferredoxin 1b (Fdx1b) Is the Essential Mitochondrial Redox Partner for Cortisol Biosynthesis in Zebrafish.Endocrinology2016
26673698Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs.Nucleic Acids Res2016
27628538The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome.Sci Rep2016
278249103D Finite Element Electrical Model of Larval Zebrafish ECG Signals.PLoS One2016
27391801Expression and knockdown of zebrafish folliculin suggests requirement for embryonic brain morphogenesis.BMC Dev Biol2016
27503357Transcriptional Regulation During Zygotic Genome Activation in Zebrafish and Other Anamniote Embryos.Adv Genet2016
27464802Testing of Cis-Regulatory Elements by Targeted Transgene Integration in Zebrafish Using PhiC31 Integrase.Methods Mol Biol2016
25233141The development and growth of tissues derived from cranial neural crest and primitive mesoderm is dependent on the ligation status of retinoic acid receptor γ: evidence that retinoic acid receptor γ functions to maintain stem/progenitor cells in the absence of retinoic acid.Stem Cells Dev2015
24413736Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants.Nat Genet2014
25243591Description of embryonic development of spotted green pufferfish (Tetraodon nigroviridis).Zebrafish2014
24531765Two independent transcription initiation codes overlap on vertebrate core promoters.Nature2014
24670763An atlas of active enhancers across human cell types and tissues.Nature2014
24632186Fish genomics: casting the net wide.Brief Funct Genomics2014
24275614Chromatin and DNA sequences in defining promoters for transcription initiation.Biochim Biophys Acta2014
24449846Targeted transgene integration overcomes variability of position effects in zebrafish.Development2014
23579446Optimisation of embryonic and larval ECG measurement in zebrafish for quantifying the effect of QT prolonging drugs.PLoS One2013
23824110Synthesis of azetidines and pyrrolidines via iodocyclisation of homoallyl amines and exploration of activity in a zebrafish embryo assay.Org Biomol Chem2013
23815359Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements.BMC Bioinformatics2013
24002785Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis.Genome Res2013
23624394Developmental toxicity and estrogenic potency of zearalenone in zebrafish (Danio rerio).Aquat Toxicol2013
23671259Redefining the initiation and maintenance of zebrafish interrenal steroidogenesis by characterizing the key enzyme cyp11a2.Endocrinology2013
23393190Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development.Nucleic Acids Res2013
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Collaborators

Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 11
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Elia Stupka
Center for Omics Sciences, IRCCS San Raffaele Scientific Institute
Co-authored papers 5
Irene Miguel-Escalada
Clinica EUGIN
Co-authored papers 5
Piotr J Balwierz
MRC London Institute of Medical Sciences
Co-authored papers 4
Peter Heutink
German Center for Neurodegenerative Diseases (DZNE).
Co-authored papers 3
Xianjun Dong
Co-authored papers 3
John S Mattick
Australia UNSW RNA Institute
Co-authored papers 2
Patrizia Rizzu
German Center for Neurodegenerative Diseases
Co-authored papers 2
Jessica Legradi
Amsterdam Institute for Life and Environment, Vrije Universiteit
Co-authored papers 2
Joseph J Locascio
Harvard Medical School, Massachusetts General Hospital
Co-authored papers 2
Matthew P Frosch
Massachusetts General Hospital and Harvard Medical School
Co-authored papers 2
Piotr Mydel
Co-authored papers 2
Vanja Haberle
Research Institute of Molecular Pathology (IMP)
Co-authored papers 2
Christopher Previti
Hopp Children's Cancer Center Heidelberg (KiTZ)
Co-authored papers 2
John C Hedreen
Co-authored papers 2
Altuna Akalin
Berlin Institute for Medical Systems Biology
Co-authored papers 2
Vidar M Steen
University of Oslo, Oslo University Hospital
Co-authored papers 1
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 1
Frederik Otzen Bagger
Center for Genomic Medicine, Rigshospitalet Copenhagen University Hospital
Co-authored papers 1
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 1
Yun Chen
Hospital of Obstetrics and Gynecology, Fudan University
Co-authored papers 1
Johanna Raithel
Leibniz Institute for Immunotherapy, c/o University Hospital Regensburg
Co-authored papers 1
Erina Furuhata
RIKEN Center for Integrative Medical Sciences
Co-authored papers 1
Erik van Nimwegen
University of Basel
Co-authored papers 1
Yuri Ishizu
RIKEN Center for Life Science Technologies
Co-authored papers 1
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 1
Euan R Brown
Institute of Biological Chemistry, Heriot Watt University
Co-authored papers 1
Jette Bornholdt
University of Copenhagen
Co-authored papers 1
Albin Sandelin
University of Copenhagen
Co-authored papers 1
Release 1.2