Skip to Main Content

Author Details

Yufeng Shen
Columbia University
2002
129
47
PMIDPaper TitleJournal TitlePublished Year
36302597Genomic Disorders in CKD across the Lifespan.J Am Soc Nephrol2023
37491581VBASS enables integration of single cell gene expression data in Bayesian association analysis of rare variants.Commun Biol2023
37751738PLS3 missense variants affecting the actin-binding domains cause X-linked congenital diaphragmatic hernia and body-wall defects.Am J Hum Genet2023
37421943Site-specific development and progressive maturation of human tissue-resident memory T cells over infancy and childhood.Immunity2023
37165897Contribution of Previously Unrecognized RNA Splice-Altering Variants to Congenital Heart Disease.Circ Genom Precis Med2023
36575831SHINE: protein language model-based pathogenicity prediction for short inframe insertion and deletion variants.Brief Bioinform2023
36803080Evidence-Based Assessment of Congenital Heart Disease Genes to Enable Returning Results in a Genomic Study.Circ Genom Precis Med2023
36866680Association of Predicted Damaging De Novo Variants on Ventricular Function in Individuals With Congenital Heart Disease.Circ Genom Precis Med2023
36658238Tissue adaptation and clonal segregation of human memory T cells in barrier sites.Nat Immunol2023
35026164The genetic architecture of pediatric cardiomyopathy.Am J Hum Genet2022
37484202Predicting functional effect of missense variants using graph attention neural networks.Nat Mach Intell2022
35800210Erratum: Identification and validation of candidate risk genes in endocytic vesicular trafficking associated with esophageal atresia and tracheoesophageal fistulas.HGG Adv2022
35838066Newborn screening for neurodevelopmental diseases: Are we there yet?Am J Med Genet C Semin Med Genet2022
35397206Neither cardiac mitochondrial DNA variation nor copy number contribute to congenital heart disease risk.Am J Hum Genet2022
35722745Clinical and genetic characterization of CACNA1A-related disease.Clin Genet2022
35939966Statistical models of the genetic etiology of congenital heart disease.Curr Opin Genet Dev2022
36311779Dysfunction of macrophages leads to diabetic bone regeneration deficiency.Front Immunol2022
36268024Rare variants and HLA haplotypes associated in patients with neuromyelitis optica spectrum disorders.Front Immunol2022
36124672Accurate in silico confirmation of rare copy number variant calls from exome sequencing data using transfer learning.Nucleic Acids Res2022
35918471Reduced calcium levels and accumulation of abnormal insulin granules in stem cell models of HNF1A deficiency.Commun Biol2022
35130025Genome-Wide De Novo Variants in Congenital Heart Disease Are Not Associated With Maternal Diabetes or Obesity.Circ Genom Precis Med2022
32641753Novel candidate genes in esophageal atresia/tracheoesophageal fistula identified by exome sequencing.Eur J Hum Genet2021
33880452Genotype and defects in microtubule-based motility correlate with clinical severity in <i>KIF1A</i>-associated neurological disorder.HGG Adv2021
33811059Human plasmacytoid dendritic cells mount a distinct antiviral response to virus-infected cells.Sci Immunol2021
33606978Functional interrogation of DNA damage response variants with base editing screens.Cell2021
33630757Lymphohematopoietic graft-versus-host responses promote mixed chimerism in patients receiving intestinal transplantation.J Clin Invest2021
35291378Integrated Analysis Toolset for Defining and Tracking Alloreactive T-cell Clones After Human Solid Organ and Hematopoietic Stem Cell Transplantation.Softw Impacts2021
34852222Heterogeneity of human anti-viral immunity shaped by virus, tissue, age, and sex.Cell Rep2021
34377931Penetrance of Breast Cancer Susceptibility Genes From the eMERGE III Network.JNCI Cancer Spectr2021
34547244Rare and de novo variants in 827 congenital diaphragmatic hernia probands implicate LONP1 as candidate risk gene.Am J Hum Genet2021
34503567Non-cancer-related pathogenic germline variants and expression consequences in ten-thousand cancer genomes.Genome Med2021
33941608Medical Records-Based Genetic Studies of the Complement System.J Am Soc Nephrol2021
34158098Correction to: Rare variant analysis of 4241 pulmonary arterial hypertension cases from an international consortium implicates FBLN2, PDGFD, and rare de novo variants in PAH.Genome Med2021
34283813Gene expression atlas of energy balance brain regions.JCI Insight2021
34023332Developmental basis of trachea-esophageal birth defects.Dev Biol2021
33058932Beta-lactam-induced immediate hypersensitivity reactions: A genome-wide association study of a deeply phenotyped cohort.J Allergy Clin Immunol2021
33482199A disorder-related variant (E420K) of a PP2A-regulatory subunit (PPP2R5D) causes constitutively active AKT-mTOR signaling and uncoordinated cell growth.J Biol Chem2021
33479230MVP predicts the pathogenicity of missense variants by deep learning.Nat Commun2021
31509321Deletion of donor-reactive T cell clones after human liver transplant.Am J Transplant2020
32059780Tissue Determinants of Human NK Cell Development, Function, and Residence.Cell2020
33372607Template-based prediction of protein structure with deep learning.BMC Genomics2020
32719394Likely damaging de novo variants in congenital diaphragmatic hernia patients are associated with worse clinical outcomes.Genet Med2020
32601476Genomic analyses implicate noncoding de novo variants in congenital heart disease.Nat Genet2020
32866288ZBTB44-FLT3 fusion in a patient with a myeloproliferative neoplasm.Br J Haematol2020
32750113Comprehensive analyses of B-cell compartments across the human body reveal novel subsets and a gut-resident memory phenotype.Blood2020
32192357Novel Mutations and Decreased Expression of the Epigenetic Regulator <i>TET2</i> in Pulmonary Arterial Hypertension.Circulation2020
30503142Human Intestinal Allografts Contain Functional Hematopoietic Stem and Progenitor Cells that Are Maintained by a Circulating Pool.Cell Stem Cell2019
31499184Pathway analysis of genomic pathology tests for prognostic cancer subtyping.J Biomed Inform2019
31253076Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial dose.BMC Mol Cell Biol2019
30920391Crossreactive public TCR sequences undergo positive selection in the human thymic repertoire.J Clin Invest2019
  • 1 - 50 of 129

Recommended Authors

Gundula Povysil
Institute for Genomic Medicine, Columbia University Medical Center
Career Start Year 2016
Number of shared co-authors 12
Eleanor G Seaby
University of Southampton
Career Start Year 2014
Number of shared co-authors 11
Goo Jun
University of Texas Health Science Center at Houston
Career Start Year 2012
Number of shared co-authors 24
Xiaowei Zhan
Southwestern Medical Center, University of Texas
Career Start Year 2012
Number of shared co-authors 12
Hao Hu
Aerospace Center Hospital
Career Start Year 2011
Number of shared co-authors 12
Manuel Holtgrewe
Berlin Institute of Health
Career Start Year 2011
Number of shared co-authors 2
Max Schubach
Berlin Institute of Health of Health at Charite - Universitatsmedizin Berlin
Career Start Year 2010
Number of shared co-authors 7
Aaron M Wenger
Stanford School of Medicine
Career Start Year 2010
Number of shared co-authors 8
Christopher DeBoever
Stanford University
Career Start Year 2010
Number of shared co-authors 3
Christian Gilissen
Radboud University Medical Center
Career Start Year 2009
Number of shared co-authors 18
Martin Kircher
Berlin Institute of Health (BIH) at Charite-Universitatsmedizin Berlin
Career Start Year 2008
Number of shared co-authors 16
Yiran Guo
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
Career Start Year 2007
Number of shared co-authors 17
Kurt N Hetrick
Center for Inherited Disease Research, Johns Hopkins School of Medicine
Career Start Year 2007
Number of shared co-authors 14
Mark J Cowley
Children's Cancer Institute, Lowy Cancer Research Centre
Career Start Year 2006
Number of shared co-authors 16
Praveen F Cherukuri
Sanford School of Medicine, University of South Dakota
Career Start Year 2005
Number of shared co-authors 8
Daniel C Koboldt
Institute for Genomic Medicine, Nationwide Children's Hospital
Career Start Year 2005
Number of shared co-authors 35
Ali Torkamani
Scripps Science Institute
Career Start Year 2005
Number of shared co-authors 13
Degui Zhi
University of Texas Health Science Center at Houston
Career Start Year 2004
Number of shared co-authors 9
Tushar Bhangale
Genentech Inc.
Career Start Year 2004
Number of shared co-authors 16
Sek Won Kong
Boston Children's Hospital, Seoul National University, Seoul National University Hospital
Career Start Year 2003
Number of shared co-authors 6
Daniel G MacArthur
Broad Institute of MIT and Harvard
Career Start Year 2003
Number of shared co-authors 43
Eric W Klee
Mayo Clinic College of Medicine and Science
Career Start Year 2001
Number of shared co-authors 17
Stacey Gabriel
Broad Institute of MIT and Harvard
Career Start Year 2001
Number of shared co-authors 70
Nancy F Hansen
National Human Genome Research Institute, National Institutes of Health
Career Start Year 2000
Number of shared co-authors 29
Xiaoming Liu
College of Electronic Science and Engineering, Jilin University
Career Start Year 1997
Number of shared co-authors 40
Jenny C Taylor
University of Oxford
Career Start Year 1996
Number of shared co-authors 14
Stanley F Nelson
university of california los angeles
Career Start Year 1993
Number of shared co-authors 27
Kimberly F Doheny
Center for Inherited Disease Research, Johns Hopkins School of Medicine
Career Start Year 1993
Number of shared co-authors 41
James C Mullikin
National Human Genome Research Institute, National Institutes of Health
Career Start Year 1985
Number of shared co-authors 80
Kelly A Frazer
University of California, USA Institute for Genomic Medicine
Career Start Year 1967
Number of shared co-authors 26

Collaborators

Wendy K Chung
Boston Children's Hospital, Harvard Medical School
Co-authored papers 50
Martina Brueckner
Co-authored papers 12
Elizabeth Goldmuntz
Co-authored papers 12
Julia Wynn
Vagelos College of Physicians and Surgeons, Columbia University
Co-authored papers 11
Christine E Seidman
Brigham and Women's Hospital (Y.K.
Co-authored papers 10
Paola Nicoletti
Icahn School of Medicine at Mount Sinai
Co-authored papers 10
Jonathan G Seidman
Harvard Medical School
Co-authored papers 9
Bruce D Gelb
Icahn School of Medicine at Mount Sinai
Co-authored papers 9
George M Weinstock
The Genome Center at Washington University, Washington University School of Medicine
Co-authored papers 8
Itsik Pe'er
Columbia University
Co-authored papers 8
Richard A Gibbs
Baylor College of Medicine
Co-authored papers 8
Jane W Newburger
Boston Children's Hospital
Co-authored papers 8
Richard Kim
Co-authored papers 8
George A Porter
Co-authored papers 7
Steven R DePalma
Co-authored papers 7
Richard P Lifton
The Rockefeller University
Co-authored papers 7
Xingzhi Song
The University of Texas MD Anderson Cancer Center
Co-authored papers 6
Chunhua Weng
Columbia University Irving Medical Center
Co-authored papers 6
Sarah U Morton
Boston Children's Hospital
Co-authored papers 6
Martin Tristani-Firouzi
Co-authored papers 5
George Hripcsak
Columbia University
Co-authored papers 5
Erica Sodergren
The Genome Institute at Washington University
Co-authored papers 5
Donna M Muzny
Baylor College of Medicine
Co-authored papers 5
Alessandro Giardini
Co-authored papers 5
Yue Liu
Institute of Animal Science (IAS), Chinese Academy of Agricultural Sciences (CAAS)
Co-authored papers 5
Mark J Daly
Massachusetts General Hospital
Co-authored papers 5
Kim C Worley
Baylor College of Medicine
Co-authored papers 5
Thomas J Urban
Eshelman School of Pharmacy, University of North Carolina
Co-authored papers 4
Lan Zhang
Baylor College of Medicine
Co-authored papers 4
Deepak Srivastava
Gladstone Institutes San Francisco
Co-authored papers 4
Release 1.2