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Author Details

Chun-Nan Hsu
University of California, C.N.H.) and Veterans Affairs San Diego Healthcare System
2001
49
22
PMIDPaper TitleJournal TitlePublished Year
35923376RadBERT: Adapting Transformer-based Language Models to Radiology.Radiol Artif Intell2022
35923376RadBERT: Adapting Transformer-based Language Models to Radiology.Radiol Artif Intell2022
33442676Federated Learning used for predicting outcomes in SARS-COV-2 patients.Res Sq2021
33914028Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition.Database (Oxford)2021
34043624Antibody Watch: Text mining antibody specificity from the literature.PLoS Comput Biol2021
33442676Federated Learning used for predicting outcomes in SARS-COV-2 patients.Res Sq2021
34526699Federated learning for predicting clinical outcomes in patients with COVID-19.Nat Med2021
33914028Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition.Database (Oxford)2021
34526699Federated learning for predicting clinical outcomes in patients with COVID-19.Nat Med2021
34043624Antibody Watch: Text mining antibody specificity from the literature.PLoS Comput Biol2021
30742121Evaluation and accurate diagnoses of pediatric diseases using artificial intelligence.Nat Med2019
31891604A phenome-wide association study (PheWAS) in the Population Architecture using Genomics and Epidemiology (PAGE) study reveals potential pleiotropy in African Americans.PLoS One2019
31488215Challenges in the construction of knowledge bases for human microbiome-disease associations.Microbiome2019
30742121Evaluation and accurate diagnoses of pediatric diseases using artificial intelligence.Nat Med2019
31891604A phenome-wide association study (PheWAS) in the Population Architecture using Genomics and Epidemiology (PAGE) study reveals potential pleiotropy in African Americans.PLoS One2019
31488215Challenges in the construction of knowledge bases for human microbiome-disease associations.Microbiome2019
29679685Identifying and characterizing highly similar notes in big clinical note datasets.J Biomed Inform2018
29679685Identifying and characterizing highly similar notes in big clinical note datasets.J Biomed Inform2018
28269947Ensembles of NLP Tools for Data Element Extraction from Clinical Notes.AMIA Annu Symp Proc2017
28269947Ensembles of NLP Tools for Data Element Extraction from Clinical Notes.AMIA Annu Symp Proc2017
26868016Erratum to: Weakly supervised learning of biomedical information extraction from curated data.BMC Bioinformatics2016
26868016Erratum to: Weakly supervised learning of biomedical information extraction from curated data.BMC Bioinformatics2016
26826020Building a Natural Language Processing Tool to Identify Patients With High Clinical Suspicion for Kawasaki Disease from Emergency Department Notes.Acad Emerg Med2016
26817711Weakly supervised learning of biomedical information extraction from curated data.BMC Bioinformatics2016
27477694Identification of latent biomarkers in hepatocellular carcinoma by ultra-deep whole-transcriptome sequencing.Oncogene2016
27570676Finding Related Publications: Extending the Set of Terms Used to Assess Article Similarity.AMIA Jt Summits Transl Sci Proc2016
27477694Identification of latent biomarkers in hepatocellular carcinoma by ultra-deep whole-transcriptome sequencing.Oncogene2016
27570676Finding Related Publications: Extending the Set of Terms Used to Assess Article Similarity.AMIA Jt Summits Transl Sci Proc2016
26826020Building a Natural Language Processing Tool to Identify Patients With High Clinical Suspicion for Kawasaki Disease from Emergency Department Notes.Acad Emerg Med2016
26817711Weakly supervised learning of biomedical information extraction from curated data.BMC Bioinformatics2016
26317409Citing a Data Repository: A Case Study of the Protein Data Bank.PLoS One2015
26317409Citing a Data Repository: A Case Study of the Protein Data Bank.PLoS One2015
24141781Identification of latent biomarkers in hepatocellular carcinoma by ultra-deep whole-transcriptome sequencing.Oncogene2014
24141781Identification of latent biomarkers in hepatocellular carcinoma by ultra-deep whole-transcriptome sequencing.Oncogene2014
25023634Analysis of metabolic syndrome components in >15 000 african americans identifies pleiotropic variants: results from the population architecture using genomics and epidemiology study.Circ Cardiovasc Genet2014
25023634Analysis of metabolic syndrome components in >15 000 african americans identifies pleiotropic variants: results from the population architecture using genomics and epidemiology study.Circ Cardiovasc Genet2014
23397142Analysis of protein-protein interactions in cross-talk pathways reveals CRKL protein as a novel prognostic marker in hepatocellular carcinoma.Mol Cell Proteomics2013
24353754PombeX: robust cell segmentation for fission yeast transillumination images.PLoS One2013
23397142Analysis of protein-protein interactions in cross-talk pathways reveals CRKL protein as a novel prognostic marker in hepatocellular carcinoma.Mol Cell Proteomics2013
23382687Phenome-wide association study (PheWAS) for detection of pleiotropy within the Population Architecture using Genomics and Epidemiology (PAGE) Network.PLoS Genet2013
24353754PombeX: robust cell segmentation for fission yeast transillumination images.PLoS One2013
23382687Phenome-wide association study (PheWAS) for detection of pleiotropy within the Population Architecture using Genomics and Epidemiology (PAGE) Network.PLoS Genet2013
22735742MetaMirClust: discovery of miRNA cluster patterns using a data-mining approach.Genomics2012
22689749Ranking of multidimensional drug profiling data by fractional-adjusted bi-partitional scores.Bioinformatics2012
22735742MetaMirClust: discovery of miRNA cluster patterns using a data-mining approach.Genomics2012
23173775A ν-support vector regression based approach for predicting imputation quality.BMC Proc2012
23173775A ν-support vector regression based approach for predicting imputation quality.BMC Proc2012
22689749Ranking of multidimensional drug profiling data by fractional-adjusted bi-partitional scores.Bioinformatics2012
21342592UMARS: Un-MAppable Reads Solution.BMC Bioinformatics2011
21342592UMARS: Un-MAppable Reads Solution.BMC Bioinformatics2011
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Collaborators

Tsung-Ting Kuo
University of California San Diego
Co-authored papers 5
Rebecca D Jackson
Co-authored papers 4
Charles Kooperberg
Co-authored papers 4
Lynne R Wilkens
University of Hawaii Cancer Center
Co-authored papers 4
Lucia A Hindorff
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 4
Jose Luis Ambite
University of Southern California
Co-authored papers 4
Amilcare Gentili
University of California
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Hongfang Liu
Mayo Clinic
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Tara C Matise
Co-authored papers 3
Lucila Ohno-Machado
Escola de Administracao de Empresas - FGV, Stanford University, University of California San Diego, University of Sao Paulo, Yale School of Medicine
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Marylyn D Ritchie
Center for Systems Genomics, Pennsylvania State University, University Park
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Richard Tzong-Han Tsai
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Steven Buyske
The State University of New Jersey
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Patrick Ruch
University of Applied Sciences and Arts of Western Switzerland (HES-SO).
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Lucila Ohno-Machado
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Alexander P Reiner
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Dana C Crawford
Cleveland Institute for Computational Biology, Case Western Reserve University
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Sarah A Pendergrass
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Loic Le Marchand
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Christopher A Haiman
University of Southern California
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Tony Mazzulli
Mount Sinai Health System and University Health Network
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Lawrence E Hunter
University of Colorado School of Medicine
Co-authored papers 2
Meena AbdelMaseeh
Lunenfeld-Tanenbaum Research Institute
Co-authored papers 2
Sharmila Majumdar
University of California san francisco
Co-authored papers 2
Shuichi Kawano
Self-Defense Forces Central Hospital
Co-authored papers 2
Hannah Carter
University of California San Diego
Co-authored papers 2
Jae Ho Sohn
University of California san francisco
Co-authored papers 2
Yu Rim Lee
Kyungpook National University
Co-authored papers 2
Chiu-Ling Lai
Medical Review and Pharmaceutical Benefits Division
Co-authored papers 2
Xihong Lin
Harvard T.H. Chan School of Public Health
Co-authored papers 2
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