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Author Details

Sergei Grudinin
University Grenoble Alpes, CNRS
2005
61
18
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36815674Stages of OCP-FRP Interactions in the Regulation of Photoprotection in Cyanobacteria, Part 2: Small-Angle Neutron Scattering with Partial Deuteration.J Phys Chem B2023
38040737Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data.Sci Data2023
36815674Stages of OCP-FRP Interactions in the Regulation of Photoprotection in Cyanobacteria, Part 2: Small-Angle Neutron Scattering with Partial Deuteration.J Phys Chem B2023
38040737Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data.Sci Data2023
34890131Session introduction: AI-driven Advances in Modeling of Protein Structure.Pac Symp Biocomput2022
36191203Docking-based long timescale simulation of cell-size protein systems at atomic resolution.Proc Natl Acad Sci U S A2022
34890131Session introduction: AI-driven Advances in Modeling of Protein Structure.Pac Symp Biocomput2022
36191203Docking-based long timescale simulation of cell-size protein systems at atomic resolution.Proc Natl Acad Sci U S A2022
32840574KORP-PL: a coarse-grained knowledge-based scoring function for protein-ligand interactions.Bioinformatics2021
33687221HOPMA: Boosting Protein Functional Dynamics with Colored Contact Maps.J Phys Chem B2021
33620450VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures.Bioinformatics2021
32840574KORP-PL: a coarse-grained knowledge-based scoring function for protein-ligand interactions.Bioinformatics2021
34519095Protein sequence-to-structure learning: Is this the end(-to-end revolution)?Proteins2021
33687221HOPMA: Boosting Protein Functional Dynamics with Colored Contact Maps.J Phys Chem B2021
33620450VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures.Bioinformatics2021
34519095Protein sequence-to-structure learning: Is this the end(-to-end revolution)?Proteins2021
32330413Predicting Protein Functional Motions: an Old Recipe with a New Twist.Biophys J2020
31784861Docking rigid macrocycles using Convex-PL, AutoDock Vina, and RDKit in the D3R Grand Challenge 4.J Comput Aided Mol Des2020
32339173Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.PLoS Comput Biol2020
31977133Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.Proteins2020
32330413Predicting Protein Functional Motions: an Old Recipe with a New Twist.Biophys J2020
33081390Hydroxylation of Antitubercular Drug Candidate, SQ109, by Mycobacterial Cytochrome P450.Int J Mol Sci2020
32621229AnAnaS: Software for Analytical Analysis of Symmetries in Protein Structures.Methods Mol Biol2020
32668232Interdomain Flexibility within NADPH Oxidase Suggested by SANS Using LMNG Stealth Carrier.Biophys J2020
31784861Docking rigid macrocycles using Convex-PL, AutoDock Vina, and RDKit in the D3R Grand Challenge 4.J Comput Aided Mol Des2020
31977133Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.Proteins2020
33081390Hydroxylation of Antitubercular Drug Candidate, SQ109, by Mycobacterial Cytochrome P450.Int J Mol Sci2020
32621229AnAnaS: Software for Analytical Analysis of Symmetries in Protein Structures.Methods Mol Biol2020
32668232Interdomain Flexibility within NADPH Oxidase Suggested by SANS Using LMNG Stealth Carrier.Biophys J2020
32339173Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.PLoS Comput Biol2020
30590384Smooth orientation-dependent scoring function for coarse-grained protein quality assessment.Bioinformatics2019
31589784Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences.Proteins2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
30590384Smooth orientation-dependent scoring function for coarse-grained protein quality assessment.Bioinformatics2019
30874723Protein model quality assessment using 3D oriented convolutional neural networks.Bioinformatics2019
31427381KAP1 is an antiparallel dimer with a functional asymmetry.Life Sci Alliance2019
31161198DeepSymmetry: using 3D convolutional networks for identification of tandem repeats and internal symmetries in protein structures.Bioinformatics2019
31254466Controlled-advancement rigid-body optimization of nanosystems.J Comput Chem2019
31589784Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences.Proteins2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
31427381KAP1 is an antiparallel dimer with a functional asymmetry.Life Sci Alliance2019
31254466Controlled-advancement rigid-body optimization of nanosystems.J Comput Chem2019
30874723Protein model quality assessment using 3D oriented convolutional neural networks.Bioinformatics2019
31161198DeepSymmetry: using 3D convolutional networks for identification of tandem repeats and internal symmetries in protein structures.Bioinformatics2019
28913782Docking of small molecules to farnesoid X receptors using AutoDock Vina with the Convex-PL potential: lessons learned from D3R Grand Challenge 2.J Comput Aided Mol Des2018
28913782Docking of small molecules to farnesoid X receptors using AutoDock Vina with the Convex-PL potential: lessons learned from D3R Grand Challenge 2.J Comput Aided Mol Des2018
29931128Deep convolutional networks for quality assessment of protein folds.Bioinformatics2018
29902523Analytical symmetry detection in protein assemblies. II. Dihedral and cubic symmetries.J Struct Biol2018
29705493Analytical symmetry detection in protein assemblies. I. Cyclic symmetries.J Struct Biol2018
29554205RapidRMSD: rapid determination of RMSDs corresponding to motions of flexible molecules.Bioinformatics2018
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Collaborators

Skolkovo Institute of Science and Technology
Co-authored papers 10
Co-authored papers 9
Co-authored papers 8
Universite de Lorraine, CNRS
Co-authored papers 6
VIB-VUB Center for Structural Biology
Co-authored papers 4
Co-authored papers 4
The Francis Crick Institute
Co-authored papers 4
Stony Brook University
Co-authored papers 4
Boston University
Co-authored papers 4
Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)
Co-authored papers 4
Seoul National University
Co-authored papers 4
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 4
European Bioinformatics Institute
Co-authored papers 4
Huazhong University of Science and Technology
Co-authored papers 4
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 4
Inria/University Grenoble Alpes/LJK-CNRS
Co-authored papers 4
Visterra Inc.
Co-authored papers 4
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 4
The University of Kansas
Co-authored papers 4
Utrecht University
Co-authored papers 4
GSK Medicines Research Centre
Co-authored papers 4
University of Massachusetts Medical School
Co-authored papers 4
The University of Kansas
Co-authored papers 4
University of California davis
Co-authored papers 3
Co-authored papers 3
Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht
Co-authored papers 3
Universite de Lorraine, CNRS
Co-authored papers 3
Co-authored papers 3
Boston University
Co-authored papers 3
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 3