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Author Details

Weidong Tian
Institute of Biostatistics, Fudan University
2003
56
22
PMIDPaper TitleJournal TitlePublished Year
35471885PhenoBERT: A Combined Deep Learning Method for Automated Recognition of Human Phenotype Ontology.IEEE/ACM Trans Comput Biol Bioinform2023
36027989Large-scale prediction of key dynamic interacting proteins in multiple cancers.Int J Biol Macromol2022
33529633CRMarker: A manually curated comprehensive resource of cancer RNA markers.Int J Biol Macromol2021
32111006Network Properties of Cancer Prognostic Gene Signatures in the Human Protein Interactome.Genes (Basel)2020
32045715qMGR: A new approach for quantifying mitochondrial genome rearrangement.Mitochondrion2020
32832275Identification of DNA methylation patterns and biomarkers for clear-cell renal cell carcinoma by multi-omics data analysis.PeerJ2020
32846127Unsupervised Inference of Developmental Directions for Single Cells Using VECTOR.Cell Rep2020
32757251Authors' reply re: Association between preconception paternal smoking and birth defects in offspring: evidence from the database of the National Free Preconception Health Examination Project in China.BJOG2020
30843052PhenoPro: a novel toolkit for assisting in the diagnosis of Mendelian disease.Bioinformatics2019
30930929Evolution and Comprehensive Analysis of DNaseI Hypersensitive Sites in Regulatory Regions of Primate Brain-Related Genes.Front Genet2019
28724398Whole genome sequencing identifies a novel ALMS1 gene mutation in two Chinese siblings with Alström syndrome.BMC Med Genet2017
28252032GenePANDA-a novel network-based gene prioritizing tool for complex diseases.Sci Rep2017
28211484Regulation of mRNA splicing by MeCP2 via epigenetic modifications in the brain.Sci Rep2017
29036410SPRINT: an SNP-free toolkit for identifying RNA editing sites.Bioinformatics2017
29213239Dynamic Editome of Zebrafish under Aminoglycosides Treatment and Its Potential Involvement in Ototoxicity.Front Pharmacol2017
26910401Prediction of Candidate Drugs for Treating Pancreatic Cancer by Using a Combined Approach.PLoS One2016
26277418GoFDR: A sequence alignment based method for predicting protein functions.Methods2016
26503768Cellulose synthesis genes CESA6 and CSI1 are important for salt stress tolerance in Arabidopsis.J Integr Plant Biol2016
27604469An expanded evaluation of protein function prediction methods shows an improvement in accuracy.Genome Biol2016
28031048China's community-based strategy of universal preconception care in rural areas at a population level using a novel risk classification system for stratifying couples´ preconception health status.BMC Health Serv Res2016
27296982GSA-Lightning: ultra-fast permutation-based gene set analysis.Bioinformatics2016
27280978Explaining the disease phenotype of intergenic SNP through predicted long range regulation.Nucleic Acids Res2016
27401230Genome-Wide Identification of Regulatory Sequences Undergoing Accelerated Evolution in the Human Genome.Mol Biol Evol2016
26750448LEGO: a novel method for gene set over-representation analysis by incorporating network-based gene weights.Sci Rep2016
26064912Prediction of Metabolic Gene Biomarkers for Neurodegenerative Disease by an Integrated Network-Based Approach.Biomed Res Int2015
26243834Positive selection on D-lactate dehydrogenases of Lactobacillus delbrueckii subspecies bulgaricus.IET Syst Biol2015
26375458Solute Carrier Family 26 Member a2 (slc26a2) Regulates Otic Development and Hair Cell Survival in Zebrafish.PLoS One2015
24499771Short-term and continuing stresses differentially interplay with multiple hormones to regulate plant survival and growth.Mol Plant2014
24604530microRNA expression profiling of heart tissue during fetal development.Int J Mol Med2014
24524080The effect of multiple single nucleotide polymorphisms in the folic acid pathway genes on homocysteine metabolism.Biomed Res Int2014
23353650A large-scale evaluation of computational protein function prediction.Nat Methods2013
24098731Revealing of Mycobacterium marinum transcriptome by RNA-seq.PLoS One2013
24003029Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.Nucleic Acids Res2013
23395826Support vector machine: classifying and predicting mutagenicity of complex mixtures based on pollution profiles.Toxicology2013
23418449Functional-network-based gene set analysis using gene-ontology.PLoS One2013
23576901Computational systems biology.ScientificWorldJournal2013
23590569Integration of cancer gene co-expression network and metabolic network to uncover potential cancer drug targets.J Proteome Res2013
21894192A network-based gene-weighting approach for pathway analysis.Cell Res2012
23319885Molecular mechanisms and function prediction of long noncoding RNA.ScientificWorldJournal2012
22984115Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients.J Infect Dis2012
22880129SAP--a sequence mapping and analyzing program for long sequence reads alignment and accurate variants discovery.PLoS One2012
22455468Epigenetic features are significantly associated with alternative splicing.BMC Genomics2012
22680987Pollution trees: identifying similarities among complex pollutant mixtures in water and correlating them to mutagenicity.Environ Sci Technol2012
22384401A Resource of Quantitative Functional Annotation for Homo sapiens Genes.G3 (Bethesda)2012
22430729Identification of novel candidate maternal serum protein markers for Down syndrome by integrated proteomic and bioinformatic analysis.Prenat Diagn2012
22121225An iterative network partition algorithm for accurate identification of dense network modules.Nucleic Acids Res2012
22120152Virion protein 16 induces demethylation of DNA integrated within chromatin in a novel mammalian cell model.Acta Biochim Biophys Sin (Shanghai)2012
20495000FuncBase: a resource for quantitative gene function annotation.Bioinformatics2010
20855837Lung adenocarcinoma from East Asian never-smokers is a disease largely defined by targetable oncogenic mutant kinases.J Clin Oncol2010
18613946A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.Genome Biol2008
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Collaborators

Frederick P Roth
University of Toronto
Co-authored papers 6
Duan Ma
Co-authored papers 5
Yuanpeng Zhou
Fudan University
Co-authored papers 5
Qingtian Gong
Fudan University
Co-authored papers 4
Feng Zhang
Obstetrics and Gynecology Hospital, Human Phenome Institute, Fudan University
Co-authored papers 4
Francis D Gibbons
Preclinical and Translational Sciences, Inc.
Co-authored papers 4
Judith A Blake
Co-authored papers 3
Christopher Funk
University of Colorado School of Medicine
Co-authored papers 2
Hai Fang
University of Bristol
Co-authored papers 2
Stefano Toppo
University of Padova
Co-authored papers 2
Tobias Hamp
Inc. San Diego
Co-authored papers 2
Asa Ben-Hur
Colorado State University
Co-authored papers 2
Michal Linial
Institute of Life Sciences, The Hebrew University of Jerusalem
Co-authored papers 2
Karin Verspoor
National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre
Co-authored papers 2
Daisuke Kihara
Purdue University
Co-authored papers 2
Iddo Friedberg
Iowa State University
Co-authored papers 2
David T Jones
University College London
Co-authored papers 2
Nives ??kunca
ETH Zurich, Universitatstrasse 19
Co-authored papers 2
Wyatt T Clark
BioMarin Pharmaceutical Inc.
Co-authored papers 2
Steven E Brenner
University of California berkeley
Co-authored papers 2
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 2
Yun Hao
University of Pennsylvania
Co-authored papers 2
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 2
Yanyan Qian
Co-authored papers 2
Domenico Cozzetto
Imperial College London
Co-authored papers 2
Prajwal Bhat
Royal Holloway University of London
Co-authored papers 2
Timothy R Hughes
University of Toronto
Co-authored papers 2
Wei Ning
ShanghaiTech University
Co-authored papers 2
Kevin Bryson
University of Glasgow
Co-authored papers 2
Pekka Koskinen
University of Helsinki and Helsinki University Hospital
Co-authored papers 2
Release 1.2