Author details

Full Name

Diego Miranda-Saavedra

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
30971822	p38Î³ is essential for cell cycle progression and liver tumorigenesis.	Nature	2019
29038451	TC-PTP regulates the IL-7 transcriptional response during murine early T cell development.	Scientific Reports	2017
28642456	Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences.	Sci Rep	2017
24632616	The protein tyrosine phosphatase PRL-2 interacts with the magnesium transporter CNNM3 to promote oncogenesis.	Oncogene	2015
28843277	Population of Monocyte-Derived Macrophages.	Immunity	2015
25771859	A Drosophila-centric view of protein tyrosine phosphatases.	FEBS Letters	2015
25765318	Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses.	Scientific Reports	2015
26175406	Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.	Elife	2015
24927962	rTRM-web: a web tool for predicting transcriptional regulatory modules for ChIP-seq-ed transcription factors.	Gene	2014
25408880	glbase: a framework for combining, analyzing and displaying heterogeneous genomic and high-throughput sequencing data.	Cell Regeneration	2014
23911837	PTP-central: a comprehensive resource of protein tyrosine phosphatases in eukaryotic genomes.	Methods	2014
23994241	Characterization of PTPN2 and its use as a biomarker.	Methods	2014
24137002	Systematic identification of transcriptional regulatory modules from protein-protein interaction networks.	Nucleic Acids Research	2014
25200712	Human dermal CD14âº cells are a transient population of monocyte-derived macrophages.	Immunity	2014
24803538	Protein tyrosine phosphatase 1B is a regulator of the interleukin-10-induced transcriptional program in macrophages.	Science Signaling	2014
25015382	Genomic analysis of the causative agents of coccidiosis in domestic chickens.	Genome Res	2014
23375108	Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling.	Genome Biol	2013
23943603	The IL-10/STAT3-mediated anti-inflammatory response: recent developments and future challenges.	Briefings in Functional Genomics	2013
23813012	Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model.	Bioinformatics	2013
24154593	Cellular network entropy as the energy potential in Waddington's differentiation landscape.	Sci Rep	2013
23879520	PTP1B: a simple enzyme for a complex world.	Critical Reviews in Biochemistry and Molecular Biology	2013
24416643	Genomic and computational approaches to dissect the mechanisms of STAT3's universal and cell type-specific functions.	JAK-STAT	2013
23393154	The repertoires of ubiquitinating and deubiquitinating enzymes in eukaryotic genomes.	Molecular Biology and Evolution	2013
23295670	Distinct transcriptional regulatory modules underlie STAT3's cell type-independent and cell type-specific functions.	Nucleic Acids Research	2013
22235329	Deep evolutionary conservation of an intramolecular protein kinase activation mechanism.	PLoS ONE	2012
22968701	TGFÎ² induces the formation of tumour-initiating cells in claudinlow breast cancer.	Nat Commun	2012
22587893	The kinomes of apicomplexan parasites.	Microbes Infect	2012
22884873	Discovery and characterization of new transcripts from RNA-seq data in mouse CD4(+) T cells.	Genomics	2012
22328731	Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machines.	Nucleic Acids Research	2012
22908928	Chemical proteomic analysis reveals the drugability of the kinome of Trypanosoma brucei.	ACS Chemical Biology	2012
22323479	Genome-wide analysis of STAT3 binding in vivo predicts effectors of the anti-inflammatory response in macrophages.	Blood	2012
21166904	An essential Aurora-related kinase transiently associates with spindle pole bodies during Plasmodium falciparum erythrocytic schizogony.	Molecular Microbiology	2011
20647567	Epigenetic silencing of BIM in glucocorticoid poor-responsive pediatric acute lymphoblastic leukemia, and its reversal by histone deacetylase inhibition.	Blood	2010
21118137	RNA-binding E3 ubiquitin ligases: novel players in nucleic acid regulation.	Biochemical Society Transactions	2010
20520714	The Ectocarpus genome and the independent evolution of multicellularity in brown algae.	Nature	2010
20197545	Characterization of a domain that transiently converts class 2 DYRKs into intramolecular tyrosine kinases.	Science Signaling	2010
20237561	Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.	Nature	2010
18974176	Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases.	Nucleic Acids Res	2009
19578406	Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication.	PLoS Genet	2009
19346560	The phosphoproteome of bloodstream form Trypanosoma brucei, causative agent of African sleeping sickness.	Mol Cell Proteomics	2009
19346495	The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development.	Blood	2009
19571317	ID1 promotes expansion and survival of primary erythroid cells and is a target of JAK2V617F-STAT5 signaling.	Blood	2009
19228925	A HaemAtlas: characterizing gene expression in differentiated human blood cells.	Blood	2009
19853570	Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse.	Dev Cell	2009
18987008	BloodExpress: a database of gene expression in mouse haematopoiesis.	Nucleic Acids Res	2009
18838119	Transcriptional regulatory networks in haematopoiesis.	Current Opinion in Genetics and Development	2008
18493051	Genome analysis of the unicellular green alga Chlamydomonas reinhardtii Indicates an ancient evolutionary origin for key pattern recognition and cell-signaling protein families.	Genetics	2008
17885136	Draft genome of the filarial nematode parasite Brugia malayi.	Science	2007
17218520	Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.	Science	2007
17557329	Classification and functional annotation of eukaryotic protein kinases.	Proteins: Structure, Function and Bioinformatics	2007