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Author Details

Aaron M Cohen
Oregon Health & Science University
1990
51
19
PMIDPaper TitleJournal TitlePublished Year
35868306Integrative analysis of drug response and clinical outcome in acute myeloid leukemia.Cancer Cell2022
35571360Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews.JAMIA Open2022
35854734Testing a filtering strategy for systematic reviews: evaluating work savings and recall.AMIA Jt Summits Transl Sci Proc2022
35783073Clinical study applying machine learning to detect a rare disease: results and lessons learned.JAMIA Open2022
32525207Identifying main finding sentences in clinical case reports.Database (Oxford)2020
32817711Correction: Detecting rare diseases in electronic health records using machine learning and knowledge engineering: Case study of acute hepatic porphyria.PLoS One2020
32308887Towards augmenting structured EHR data: a comparison of manual chart review and patient self-report.AMIA Annu Symp Proc2020
30654030Unsupervised low-dimensional vector representations for words, phrases and text that are transparent, scalable, and produce similarity metrics that are not redundant with neural embeddings.J Biomed Inform2019
31210531Modelling disease risk for amyloid A (AA) amyloidosis in non-human primates using machine learning.Amyloid2019
30766970Design of a generic, open platform for machine learning-assisted indexing and clustering of articles in PubMed, a biomedical bibliographic database.Data Inf Manag2018
30184195A probabilistic automated tagger to identify human-related publications.Database (Oxford)2018
29854131Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval.AMIA Annu Symp Proc2018
28541493Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach.J Am Med Inform Assoc2017
28269920A Mixed Methods Task Analysis of the Implementation and Validation of EHR-Based Clinical Quality Measures.AMIA Annu Symp Proc2017
25461812Aggregator: a machine learning approach to identifying MEDLINE articles that derive from the same underlying clinical trial.Methods2015
26426747Plasma Exosomal miRNAs in Persons with and without Alzheimer Disease: Altered Expression and Prospects for Biomarkers.PLoS One2015
25656516Automated confidence ranked classification of randomized controlled trial articles: an aid to evidence-based medicine.J Am Med Inform Assoc2015
24434031Rule-based deduplication of article records from bibliographic databases.Database (Oxford)2014
25825665Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers.Health Inf Sci Syst2014
24399964Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences.Front Neuroinform2013
24551345A large-scale analysis of the reasons given for excluding articles that are retrieved by literature search during systematic review.AMIA Annu Symp Proc2013
24303233Tools for Identifying Reliable Evidence and Implementing it in Everyday Clinical Care.AMIA Jt Summits Transl Sci Proc2013
21339533k-Information gain scaled nearest neighbors: a novel approach to classifying protein-protein interaction-related documents.IEEE/ACM Trans Comput Biol Bioinform2012
23195123Text-mining and neuroscience.Int Rev Neurobiol2012
23304287Barriers to retrieving patient information from electronic health record data: failure analysis from the TREC Medical Records Track.AMIA Annu Symp Proc2012
22515596Studying the potential impact of automated document classification on scheduling a systematic review update.BMC Med Inform Decis Mak2012
21169622Performance of support-vector-machine-based classification on 15 systematic review topics evaluated with the WSS@95 measure.J Am Med Inform Assoc2011
22073148Occupancy classification of position weight matrix-inferred transcription factor binding sites.PLoS One2011
22195085From simply inaccurate to complex and inaccurate: complexity in standards-based quality measures.AMIA Annu Symp Proc2011
21346945Understanding Inter-rater Disagreement: A Mixed Methods Approach.AMIA Annu Symp Proc2010
21346953A Prospective Evaluation of an Automated Classification System to Support Evidence-based Medicine and Systematic Review.AMIA Annu Symp Proc2010
19208193Evaluation of a gene information summarization system by users during the analysis process of microarray datasets.BMC Bioinformatics2009
19390099A system for classifying disease comorbidity status from medical discharge summaries using automated hotspot and negated concept detection.J Am Med Inform Assoc2009
19567792Cross-topic learning for work prioritization in systematic review creation and update.J Am Med Inform Assoc2009
17947623Five-way smoking status classification using text hot-spot identification and error-correcting output codes.J Am Med Inform Assoc2008
18834498Text mining for biology--the way forward: opinions from leading scientists.Genome Biol2008
18834494Overview of BioCreative II gene normalization.Genome Biol2008
18999089Discovering synergistic qualities of published authors to enhance translational research.AMIA Annu Symp Proc2008
18998798Optimizing feature representation for automated systematic review work prioritization.AMIA Annu Symp Proc2008
18693910A comparative analysis of retrieval features used in the TREC 2006 Genomics Track passage retrieval task.AMIA Annu Symp Proc2007
18693953Automatic summarization of mouse gene information by clustering and sentence extraction from MEDLINE abstracts.AMIA Annu Symp Proc2007
16357352Reducing workload in systematic review preparation using automated citation classification.J Am Med Inform Assoc2006
17238323An effective general purpose approach for automated biomedical document classification.AMIA Annu Symp Proc2006
17238770Functional gene group summarization by clustering MEDLINE abstract sentences.AMIA Annu Symp Proc2006
16722582The TREC 2004 genomics track categorization task: classifying full text biomedical documents.J Biomed Discov Collab2006
16722581Enhancing access to the Bibliome: the TREC 2004 Genomics Track.J Biomed Discov Collab2006
15847682Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts.BMC Bioinformatics2005
15826357A survey of current work in biomedical text mining.Brief Bioinform2005
15036077A categorization and analysis of the criticisms of Evidence-Based Medicine.Int J Med Inform2004
16379931Criticisms of evidence-based medicine.Evid Based Cardiovasc Med2004
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Collaborators

William Hersh
Oregon Health & Science University
Co-authored papers 16
Kyle Ambert
Oregon Health & Science University
Co-authored papers 8
Marian S McDonagh
Oregon Health & Science University
Co-authored papers 7
Steven Bedrick
Colorado College, Oregon Health & Science University, Oregon Health and Science University
Co-authored papers 3
David A Dorr
Department of Medical Informatics and Clinical Epidemiology
Co-authored papers 3
Tracy Edinger
Co-authored papers 3
Jianji Yang
VA Portland Healthcare System
Co-authored papers 3
Lynette Hirschman
The MITRE Corporation
Co-authored papers 2
Thomas G DeLoughery
Oregon Health & Science University
Co-authored papers 2
Nicole G Weiskopf
Department of Medical Informatics and Clinical Epidemiology
Co-authored papers 2
Dina Demner-Fushman
Lister Hill National Center for Biomedical Communications
Co-authored papers 2
Shannon K McWeeney
Oregon Health & Science University, University of California Berkeley
Co-authored papers 2
Kemal Sonmez
Casey Eye Institute Oregon Health & Science University.
Co-authored papers 2
Manuel C Peitsch
Philip Morris International Research Laboratories Pte. Ltd
Co-authored papers 1
Ted Laderas
Oregon Health & Science University
Co-authored papers 1
Jessica Leonard
Oregon Health & Science University
Co-authored papers 1
Joelle Wolf
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 1
Katherine L Bensching
Oregon Health & Science University
Co-authored papers 1
Christopher J Fields
University of Illinois Urbana-Champaign
Co-authored papers 1
Nicola Long
Oregon Health and Science University
Co-authored papers 1
Aurora S Blucher
Knight Cancer Institute, Oregon Health Sciences University
Co-authored papers 1
James Dibb
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 1
Andy Kaempf
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 1
David Tyler Sweeney
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 1
Elie Traer
Oregon Health & Science University
Co-authored papers 1
Haijiao Zhang
Oregon Health & Science University, Knight Cancer Institute
Co-authored papers 1
Po-Yin Yen
Institute for Informatics, Washington University School of Medicine
Co-authored papers 1
Marsha Pierre-Jacques Williams
Oregon Health and Science University
Co-authored papers 1
Russell T Burke
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Stuart Hagler
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Release 1.2