Author details

Full Name

David L Stokes

Affiliation

NYU School of Medicine

ORCID

Career Start Year

1986

Papers

105

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36865113	Energy Coupling and Stoichiometry of Zn<sup>2+</sup>/H<sup>+</sup> Antiport by the Cation Diffusion Facilitator YiiP.	bioRxiv	2023
37574372	Substrate recognition and transport mechanism of the PIN-FORMED auxin exporters.	Trends Biochem Sci	2023
35768502	Structures and mechanism of the plant PIN-FORMED auxin transporter.	Nature	2022
34254979	Zinc binding alters the conformational dynamics and drives the transport cycle of the cation diffusion facilitator YiiP.	J Gen Physiol	2021
34272288	Structural basis for potassium transport in prokaryotes by KdpFABC.	Proc Natl Acad Sci U S A	2021
33951450	An Intracellular Pathway Controlled by the N-terminus of the Pump Subunit Inhibits the Bacterial KdpFABC Ion Pump in High K<sup>+</sup> Conditions.	J Mol Biol	2021
32955430	Serine phosphorylation regulates the P-type potassium pump KdpFABC.	Elife	2020
31259644	The KdpFABC complex - K<sup>+</sup> transport against all odds.	Mol Membr Biol	2019
29507252	Structural basis for the alternating access mechanism of the cation diffusion facilitator YiiP.	Proc Natl Acad Sci U S A	2018
29539637	Integrative structure and functional anatomy of a nuclear pore complex.	Nature	2018
27717063	Structure of the SLC4 transporter Bor1p in an inward-facing conformation.	Protein Sci	2017
28162953	Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex.	Structure	2017
28991926	Image-based model of the spectrin cytoskeleton for red blood cell simulation.	PLoS Comput Biol	2017
28821608	The transmembrane domain of the p75 neurotrophin receptor stimulates phosphorylation of the TrkB tyrosine kinase receptor.	J Biol Chem	2017
28636601	Crystal structure of the potassium-importing KdpFABC membrane complex.	Nature	2017
27402899	Purification and analysis of endogenous human RNA exosome complexes.	RNA	2016
27839866	Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform.	Cell	2016
27255388	Deducing the symmetry of helical assemblies: Applications to membrane proteins.	J Struct Biol	2016
25478971	Sparse and incomplete factorial matrices to screen membrane protein 2D crystallization.	J Struct Biol	2015
24487619	Polarized release of T-cell-receptor-enriched microvesicles at the immunological synapse.	Nature	2014
24503478	Cyclooxygenase-2 catalysis and inhibition in lipid bilayer nanodiscs.	Arch Biochem Biophys	2014
23132064	Modeling, docking, and fitting of atomic structures to 3D maps from cryo-electron microscopy.	Methods Mol Biol	2013
24136164	Three-dimensional reconstruction of intact human integrin Î±IIbÎ²3: new implications for activation-dependent ligand binding.	Blood	2013
23381628	Coordinating the impact of structural genomics on the human Î±-helical transmembrane proteome.	Nat Struct Mol Biol	2013
23499021	Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex.	Structure	2013
23341604	Inward-facing conformation of the zinc transporter YiiP revealed by cryoelectron microscopy.	Proc Natl Acad Sci U S A	2013
23132066	High-throughput methods for electron crystallography.	Methods Mol Biol	2013
22325770	Outcome of the first electron microscopy validation task force meeting.	Structure	2012
22941046	The physical state of lipid substrates provides transacylation specificity for tafazzin.	Nat Chem Biol	2012
23130124	Tafazzin knockdown in mice leads to a developmental cardiomyopathy with early diastolic dysfunction preceding myocardial noncompaction.	J Am Heart Assoc	2012
22572457	Membrane protein structure determination by electron crystallography.	Curr Opin Struct Biol	2012
22248449	Real-space processing of helical filaments in SPARX.	J Struct Biol	2012
22331846	Structure-function mapping of a heptameric module in the nuclear pore complex.	J Cell Biol	2012
21259318	Electron tomography of paranodal septate-like junctions and the associated axonal and glial cytoskeletons in the central nervous system.	J Neurosci Res	2011
22098732	Native ultrastructure of the red cell cytoskeleton by cryo-electron tomography.	Biophys J	2011
21820315	The architecture of CopA from Archeaoglobus fulgidus studied by cryo-electron microscopy and computational docking.	Structure	2011
21539786	Cardiolipin affects the supramolecular organization of ATP synthase in mitochondria.	Biophys J	2011
21489589	Toroidal surface complexes of bacteriophage Ï¿12 are responsible for host-cell attachment.	Virology	2011
21108950	Phosphorylation and mutation of phospholamban alter physical interactions with the sarcoplasmic reticulum calcium pump.	J Mol Biol	2011
20349145	An automated pipeline to screen membrane protein 2D crystallization.	J Struct Funct Genomics	2010
21115172	Present and future of membrane protein structure determination by electron crystallography.	Adv Protein Chem Struct Biol	2010
20888960	Fourier-Bessel reconstruction of helical assemblies.	Methods Enzymol	2010
20444085	Membrane invagination in Rhodobacter sphaeroides is initiated at curved regions of the cytoplasmic membrane, then forms both budded and fully detached spherical vesicles.	Mol Microbiol	2010
20665267	Two-dimensional crystallization of integral membrane proteins for electron crystallography.	Methods Mol Biol	2010
20672011	Exploring the Nature of Desmosomal Cadherin Associations in 3D.	Dermatol Res Pract	2010
20197095	Automated electron microscopy for evaluating two-dimensional crystallization of membrane proteins.	J Struct Biol	2010
20385088	Highly compacted chromatin formed in vitro reflects the dynamics of transcription activation in vivo.	Mol Cell	2010
19114128	Distinct effects of tafazzin deletion in differentiated and undifferentiated mitochondria.	Mitochondrion	2009
19727406	Three-dimensional structure of the enveloped bacteriophage phi12: an incomplete T = 13 lattice is superposed on an enclosed T = 1 shell.	PLoS One	2009
18022662	Electron cryo-tomographic structure of cystovirus phi 12.	Virology	2008

1 - 50 of 105

Jianhua Zhao

University of California san francisco

Career Start Year 2013

Number of shared co-authors 3

Shenping Wu

Yale University

Career Start Year 2006

Number of shared co-authors 7

Elizabeth Villa

University of California San Diego, USA Howard Hughes Medical Institute

Career Start Year 2005

Number of shared co-authors 12

Gabriel C Lander

The Scripps Research Institute

Career Start Year 2003

Number of shared co-authors 3

Maya Topf

Leibniz-Institut fur Virologie (LIV)

Career Start Year 2001

Number of shared co-authors 15

Maofu Liao

Harvard Medical School

Career Start Year 2000

Number of shared co-authors 5

Scott M Stagg

Florida State University

Career Start Year 2000

Number of shared co-authors 6

J??rgen M Plitzko

Max Planck Institute of Biochemistry

Career Start Year 1999

Number of shared co-authors 2

Georgios Skiniotis

Stanford University School of Medicine

Career Start Year 1999

Number of shared co-authors 1

Yifan Cheng

Quantitative Bioscience Institute, University of California san francisco

Career Start Year 1997

Number of shared co-authors 10

Clemens Vonrhein

Global Phasing Ltd

Career Start Year 1995

Number of shared co-authors 6

J. B Heymann

Frederick National Laboratory for Cancer Research, Inc.

Career Start Year 1994

Number of shared co-authors 17

Robyn Roth

Washington University School of Medicine

Career Start Year 1993

Number of shared co-authors 1

Michael Overduin

University of Alberta

Career Start Year 1992

Number of shared co-authors 2

Vadim A Klenchin

University of Wisconsin-Madison

Career Start Year 1991

Number of shared co-authors 3

Friedrich F??rster

Utrecht University

Career Start Year 1990

Number of shared co-authors 2

Henning Stahlberg

Ecole Polytechnique Federale de Lausanne (EPFL), University of Lausanne

Career Start Year 1988

Number of shared co-authors 11

Agustin Avila-Sakar

Lawrence Berkeley National Laboratory, University of California

Career Start Year 1986

Number of shared co-authors 8

John F Hunt

Columbia University

Career Start Year 1986

Number of shared co-authors 12

Thomas Earnest

Washington University School of Medicine in St. Louis

Career Start Year 1982

Number of shared co-authors 5

Irina I Serysheva

McGovern Medical School at The University of Texas Health Science Center at Houston

Career Start Year 1979

Number of shared co-authors 6

Paul Matsudaira

Center for BioImaging Sciences (CBIS), National University of Singapore

Career Start Year 1978

Number of shared co-authors 4

David A Agard

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Career Start Year 1977

Number of shared co-authors 10

Ivan Rayment

College of Agricultural and Life Sciences, University of Wisconsin-Madison

Career Start Year 1976

Number of shared co-authors 5

Helen R Saibil

Institute of Structural and Molecular Biology, University of London

Career Start Year 1976

Number of shared co-authors 13

George N Phillips

Rice University

Career Start Year 1974

Number of shared co-authors 10

Wolfgang Baumeister

Max Planck Institute of Biochemistry

Career Start Year 1974

Number of shared co-authors 5

John E Heuser

Washington University School of Medicine

Career Start Year 1966

Number of shared co-authors 5

Robert M Glaeser

Lawrence Berkeley National Laboratory

Career Start Year 1963

Number of shared co-authors 8

David Eisenberg

university of california los angeles

Career Start Year 1963

Number of shared co-authors 5

row(s) 1 - 30 of 30

William J Rice

New York University Grossman School of Medicine

Co-authored papers 20

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 7

Bj??rn Panyella Pedersen

Aarhus University

Co-authored papers 7

Michael P Rout

The Rockefeller University

Co-authored papers 6

Javier Fernandez-Martinez

The Rockefeller University

Co-authored papers 5

Paula Upla

Skirball Institute of Biomolecular Medicine, New York University School of Medicine

Co-authored papers 5

Seung Joong Kim

Korea Advanced Institute of Science and Technology (KAIST)

Co-authored papers 4

Rosemary Williams

The Rockefeller University

Co-authored papers 4

Peijun Zhang

Co-authored papers 4

Brian T Chait

The Rockefeller University

Co-authored papers 3

Ilan E Chemmama

University of California san francisco

Co-authored papers 3

Mark E Dumont

University of Rochester Medical Center

Co-authored papers 3

Pawel A Penczek

The University of Texas, McGovern Medical School

Co-authored papers 3

Michael G Malkowski

Jacobs School of Medicine and Biomedical Sciences, University of Buffalo

Co-authored papers 2

Steven C Almo

Albert Einstein College of Medicine

Co-authored papers 2

Ursula Pieper

University of California san francisco

Co-authored papers 2

Ilona Nudelman

The Rockefeller University

Co-authored papers 2

Yi Shi

College of Medicine, Yangzhou University

Co-authored papers 2

Jeremy Phillips

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Co-authored papers 2

Subbiah Parthasarathy

New York University Grossman School of Medicine

Co-authored papers 2

Ruben Diaz-Avalos

Howard Hughes Medical Institute

Co-authored papers 2

Riccardo Pellarin

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Co-authored papers 2

Jeffrey B Bonanno

Albert Einstein College of Medicine

Co-authored papers 2

Edward H Egelman

University of Virginia

Co-authored papers 2

Steven J Ludtke

Baylor College of Medicine

Co-authored papers 2

Junjie Wang

The Rockefeller University

Co-authored papers 2

Wenzhu Zhang

Dalian University of Technology

Co-authored papers 2

Natalia E Ketaren

The Rockefeller University

Co-authored papers 2

Michael C Wiener

University of Virginia

Co-authored papers 1

Kelly R Molloy

The Rockefeller University

Co-authored papers 1

1 - 30

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