Author details

Full Name

Maxwell W Libbrecht

Affiliation

ORCID

Career Start Year

2012

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36534827	Integrative chromatin domain annotation through graph embedding of Hi-C data.		2023
36192604	Obtaining genetics insights from deep learning via explainable artificial intelligence.	Nat Rev Genet	2023
34718413	SigTools: exploratory visualization for genomic signals.		2022
35764630	Learning representations of chromatin contacts using a recurrent neural network identifies genomic drivers of conformation.	Nature Communications	2022
35622798	DEEMD: Drug Efficacy Estimation Against SARS-CoV-2 Based on Cell Morphology With Deep Multiple Instance Learning.	IEEE Transactions on Medical Imaging	2022
34043510	Latent Representation of the Human Pan-Celltype Epigenome Through a Deep Recurrent Neural Network.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2022
34559446	Automated identification of maximal differential cell populations in flow cytometry data.	Cytometry A	2022
34648491	Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns.	PLoS Comput Biol	2021
34165492	VSS: variance-stabilized signals for sequencing-based genomic signals.		2021
34165419	SplitStrains, a tool to identify and separate mixed infections from WGS data.	Microbial genomics	2021
34376217	INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis.	Algorithms for Molecular Biology	2021
31462275	A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types.	Genome Biol	2019
29643364	PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition.	Nature Communications	2018
29028889	Segway 2.0: Gaussian mixture models and minibatch training.	Bioinformatics	2018
29345009	Choosing non-redundant representative subsets of protein sequence data sets using submodular optimization.	Proteins: Structure, Function and Bioinformatics	2018
27846892	Choosing panels of genomics assays using submodular optimization.		2016
27168766	Distinct epigenetic features of differentiation-regulated replication origins.	Epigenetics Chromatin	2016
25948244	Machine learning applications in genetics and genomics.	Nature Reviews Genetics	2015
25677182	Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression.	Genome Res	2015
25164756	Comparative analysis of metazoan chromatin organization.	Nature	2014
23221638	Integrative annotation of chromatin elements from ENCODE data.	Nucleic Acids Res	2013
22955985	Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements.	Genome Res	2012