Author details

Full Name

Fereydoun Hormozdiari

Affiliation

University of California davis

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36550274	SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads.	Nat Methods	2023
35596027	Prediction of Neurodevelopmental Disorders Based on De Novo Coding Variation.	J Autism Dev Disord	2023
36625266	Dr.Nod: computational framework for discovery of regulatory non-coding drivers in tissue-matched distal regulatory elements.	Nucleic Acids Res	2023
36699383	MAGI-MS: multiple seed-centric module discovery.	Bioinform Adv	2022
33503255	Nebula: ultra-efficient mapping-free structural variant genotyper.	Nucleic Acids Res	2021
36700094	Comparative genome analysis using sample-specific string detection in accurate long reads.	Bioinform Adv	2021
31584621	Meltos: multi-sample tumor phylogeny reconstruction for structural variants.	Bioinformatics	2020
30559488	Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity.	Nat Genet	2019
31653223	Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders.	Genome Med	2019
31492842	Functional disease architectures reveal unique biological role of transposable elements.	Nat Commun	2019
31377530	Kevlar: A Mapping-Free Framework for Accurate Discovery of De Novo Variants.	iScience	2019
30898144	TAD fusion score: discovery and ranking the contribution of deletions to genome structure.	Genome Biol	2019
30833765	How bioinformatics and open data can boost basic science in countries and universities with limited resources.	Nat Biotechnol	2019
30937433	Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.	Bioinformatics	2019
29618373	Genetic variation associated with increased insecticide resistance in the malaria mosquito, Anopheles coluzzii.	Parasit Vectors	2018
29880660	High-resolution comparative analysis of great ape genomes.	Science	2018
30297454	Combinatorial Approach for Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders.	Genetics	2018
28583483	Toolkit for automated and rapid discovery of structural variants.	Methods	2017
28191889	Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.	Nat Genet	2017
28965761	Genomic Patterns of De Novo Mutation in Simplex Autism.	Cell	2017
26749308	Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA.	Am J Hum Genet	2016
27708267	A high-quality human reference panel reveals the complexity and distribution of genomic structural variants.	Nat Commun	2016
25378250	The discovery of integrated gene networks for autism and related disorders.	Genome Res	2015
26249230	Global diversity, population stratification, and selection of human copy-number variation.	Science	2015
26432246	An integrated map of structural variation in 2,504 human genomes.	Nature	2015
25883321	Characteristics of de novo structural changes in the human genome.	Genome Res	2015
25383537	Resolving the complexity of the human genome using single-molecule sequencing.	Nature	2015
25116239	Whole-genome sequencing of individuals from a founder population identifies candidate genes for asthma.	PLoS One	2014
23721540	The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild.	BMC Genomics	2013
23884656	Rates and patterns of great ape retrotransposition.	Proc Natl Acad Sci U S A	2013
23823723	Great ape genetic diversity and population history.	Nature	2013
22294438	Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer.	J Pathol	2012
22553170	From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer.	J Pathol	2012
21131385	Alu repeat discovery and characterization within human genomes.	Genome Res	2011
22048523	Simultaneous structural variation discovery among multiple paired-end sequenced genomes.	Genome Res	2011
21625565	deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.	PLoS Comput Biol	2011
21685127	Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee.	Genome Res	2011
21293372	Mapping copy number variation by population-scale genome sequencing.	Nature	2011
21478487	Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.	Bioinformatics	2011
20078394	Towards improved assessment of functional similarity in large-scale screens: a study on indel length.	J Comput Biol	2010
20500021	Protein-protein interaction network evaluation for identifying potential drug targets.	J Comput Biol	2010
20529927	Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.	Bioinformatics	2010
20676076	mrsFAST: a cache-oblivious algorithm for short-read mapping.	Nat Methods	2010
20385726	Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.	Bioinformatics	2010
19213135	Dense graphlet statistics of protein interaction and random networks.	Pac Symp Biocomput	2009
19718026	Personalized copy number and segmental duplication maps using next-generation sequencing.	Nat Genet	2009
19483690	MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions.	Nat Methods	2009
19447966	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes.	Genome Res	2009
19193143	The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study.	J Comput Biol	2009
18586721	Biomolecular network motif counting and discovery by color coding.	Bioinformatics	2008

1 - 50 of 53

Fritz J Sedlazeck

Baylor College of Medicine

Career Start Year 2012

Number of shared co-authors 29

Ben Weisburd

Broad Institute of MIT and Harvard

Career Start Year 2012

Number of shared co-authors 7

Ryan M Layer

Boulder and BioFrontiers Institute, University of Colorado Boulder

Career Start Year 2011

Number of shared co-authors 2

Manuel Holtgrewe

Berlin Institute of Health

Career Start Year 2011

Number of shared co-authors 0

Max Schubach

Berlin Institute of Health of Health at Charite - Universitatsmedizin Berlin

Career Start Year 2010

Number of shared co-authors 2

Aaron M Wenger

Stanford School of Medicine

Career Start Year 2010

Number of shared co-authors 29

Orion J Buske

The Hospital for Sick Children

Career Start Year 2010

Number of shared co-authors 10

Marten J??ger

Charite Universitatsmedizin Berlin

Career Start Year 2010

Number of shared co-authors 0

Christian Gilissen

Radboud University Medical Center

Career Start Year 2009

Number of shared co-authors 11

Aakrosh Ratan

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 24

Martin Kircher

Berlin Institute of Health (BIH) at Charite-Universitatsmedizin Berlin

Career Start Year 2008

Number of shared co-authors 14

Tomasz Gambin

Institute of Computer Science, Warsaw University of Technology

Career Start Year 2007

Number of shared co-authors 14

Jeffrey G Reid

Regeneron Pharmaceuticals, Inc.

Career Start Year 2007

Number of shared co-authors 12

Aaron R Quinlan

University of Utah

Career Start Year 2007

Number of shared co-authors 9

Stephan Ossowski

Institute of Medical Genetics and Applied Genomics, University of Tubingen

Career Start Year 2006

Number of shared co-authors 8

Vladimir Vacic

Stanley Institute for Cognitive Genomics

Career Start Year 2005

Number of shared co-authors 8

Daniel R Zerbino

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 13

Daniel C Koboldt

Institute for Genomic Medicine, Nationwide Children's Hospital

Career Start Year 2005

Number of shared co-authors 36

Vikas Bansal

University of California San Diego

Career Start Year 2004

Number of shared co-authors 4

Alicia Hawes

Regeneron Pharmaceuticals Inc.

Career Start Year 2004

Number of shared co-authors 30

Lachlan J M Coin

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne

Career Start Year 2003

Number of shared co-authors 17

Yufeng Shen

Columbia University

Career Start Year 2002

Number of shared co-authors 17

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 4

Kai Wang

University of Pennsylvania

Career Start Year 2001

Number of shared co-authors 11

Nancy F Hansen

National Human Genome Research Institute, National Institutes of Health

Career Start Year 2000

Number of shared co-authors 40

Eric Banks

Broad Institute of MIT and Harvard

Career Start Year 1999

Number of shared co-authors 16

Shamil R Sunyaev

Harvard Medical School

Career Start Year 1997

Number of shared co-authors 40

Mark Yandell

University of Utah

Career Start Year 1994

Number of shared co-authors 20

Michael E Zwick

Rutgers University-New Brunswick, Rutgers University

Career Start Year 1989

Number of shared co-authors 1

Richard Durbin

University of Cambridge

Career Start Year 1964

Number of shared co-authors 45

row(s) 1 - 30 of 30

Evan E Eichler

University of Washington

Co-authored papers 24

Suleyman Cenk Sahinalp

National Cancer Institute, National Institutes of Health

Co-authored papers 18

Can Alkan

Bilkent University

Co-authored papers 15

Iman Hajirasouliha

Institute for Computational Biomedicine

Co-authored papers 11

Carl Baker

University of Washington School of Medicine

Co-authored papers 7

Jeffrey M Kidd

University of Michigan Medical School ann arbor

Co-authored papers 6

Faraz Hach

University of British Columbia

Co-authored papers 6

Tomas Marques-Bonet

University of California san francisco

Co-authored papers 5

Andrew McPherson

Memorial Sloan Kettering Cancer Center

Co-authored papers 5

Kai Ye

Co-authored papers 4

Chunxiao Wu

Shandong Provincial Hospital, Cheeloo College of Medicine, Shandong University

Co-authored papers 3

Richard K Wilson

The Ohio State University

Co-authored papers 3

Mark J P Chaisson

University of Southern California

Co-authored papers 3

Jay Shendure

University of Washington

Co-authored papers 3

Miriam K Konkel

Clemson University

Co-authored papers 3

Robert E Handsaker

Co-authored papers 3

Arcadi Navarro

Barcelonabeta Brain Research Center (BBRC), Pasqual Maragall Foundation

Co-authored papers 3

Mark A Batzer

Louisiana State University

Co-authored papers 3

Stanislav V Volik

University of British Columbia

Co-authored papers 3

Colin C Collins

University of British Columbia

Co-authored papers 3

Marco A Marra

University of British Columbia

Co-authored papers 3

Anna Lapuk

Contextual Genomics Inc.

Co-authored papers 3

Farhad Hormozdiari

Co-authored papers 3

Martin Hirst

University of British Columbia

Co-authored papers 2

Rayan Chikhi

Co-authored papers 2

Dorret I Boomsma

Co-authored papers 2

Robert B Darnell

Co-authored papers 2

Ken Chen

University of Texas MD Anderson Cancer Center

Co-authored papers 2

Ryan E Mills

University of Michigan Medical School ann arbor

Co-authored papers 2

Mark Gerstein

Yale University

Co-authored papers 2

1 - 30

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