Author details

Full Name

Rama Ranganathan

Affiliation

ORCID

Career Start Year

1975

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36603919	Cancer survival in Africa, central and south America, and Asia (SURVCAN-3): a population-based benchmarking study in 32 countries.	Lancet Oncol	2023
37988083	ProtWave-VAE: Integrating Autoregressive Sampling with Latent-Based Inference for Data-Driven Protein Design.		2023
37461732	Functional Protein Dynamics in a Crystal.		2023
36693377	Undersampling and the inference of coevolution in proteins.		2023
36158987	Metaplastic carcinoma of the breast: real-world outcome from a tertiary cancer centre in India.	ecancermedicalscience	2022
34901519	Definitive chemoradiation in locally advanced inoperable esophageal cancer patients - Retrospective analysis of different chemotherapy regimens in a tertiary cancer centre.		2021
35549066	100th Anniversary of Macromolecular Science Viewpoint: Data-Driven Protein Design.	ACS Macro Letters	2021
33477124	Roadmap on biology in time varying environments.	Physical Biology	2021
31054105	Prognostic Factors and Survival Outcomes of Surgical Resection of Huge Hepatocellular Carcinomas.	Journal of Gastrointestinal Cancer	2020
32703877	An evolution-based model for designing chorismate mutase enzymes.	Science	2020
32747536	RNA sectors and allosteric function within the ribosome.	Proceedings of the National Academy of Sciences of the United States of America	2020
32568452	Olanzapine versus metoclopramide for the treatment of breakthrough chemotherapy-induced vomiting in children: An open-label, randomized phase 3 trial.	Pediatr Blood Cancer	2020
31527666	Learning the pattern of epistasis linking genotype and phenotype in a protein.	Nature Communications	2019
29556064	An evolutionary hotspot defines functional differences between CRYPTOCHROMES.	Nature Communications	2018
32995509	A set of experimentally validated, mutually orthogonal primers for combinatorially specifying genetic components.	Synthetic Biology	2018
28963691	Surgical Resection for Hepatoblastoma-Updated Survival Outcomes.	Journal of Gastrointestinal Cancer	2018
30024376	Coevolution-based inference of amino acid interactions underlying protein function.	eLife	2018
30500528	Putting Evolution to Work.	Cell	2018
30243563	Hierarchical Organization Endows the Kinase Domain with Regulatory Plasticity.	Cell Syst	2018
27484980	Long-Term Outcomes and Prognostic Factors in Periampullary Carcinoma.	Journal of Gastrointestinal Cancer	2017
28686159	Deconstruction of the Ras switching cycle through saturation mutagenesis.	Elife	2017
27926732	Electric-field-stimulated protein mechanics.	Nature	2016
27337695	The Context-Dependence of Mutations: A Linkage of Formalisms.	PLoS Computational Biology	2016
27321669	Origins of Allostery and Evolvability in Proteins: A Case Study.	Cell	2016
27403811	A Protocol for Functional Assessment of Whole-Protein Saturation Mutagenesis Libraries Utilizing High-Throughput Sequencing.	Journal of Visualized Experiments	2016
27254668	Evolution-Based Functional Decomposition of Proteins.	PLoS Computational Biology	2016
27700984	An electrostatic selection mechanism controls sequential kinase signaling downstream of the T cell receptor.	Elife	2016
25723163	Evolvability as a function of purifying selection in TEM-1 Î²-lactamase.	Cell	2015
24518821	A novel allosteric mechanism in the cysteine peptidase cathepsin K discovered by computational methods.	Nat Commun	2014
24444761	Systems-level characterization of the kernel mechanism of the cyanobacterial circadian oscillator.	BioSystems	2014
23422432	Evolution-based design of proteins.	Methods in Enzymology	2013
23041932	The spatial architecture of protein function and adaptation.	Nature	2012
22842173	The relevance of "Nonsmoking-associated lung cancer" in India: a single-centre experience.	Indian Journal of Cancer	2012
22900029	Quantifying the rhythm of KaiB-C interaction for in vitro cyanobacterial circadian clock.	PLoS ONE	2012
21554745	Prognostic factors in patients with node-negative gastric cancer: an Indian experience.	World Journal of Surgical Oncology	2011
22196731	Hot spots for allosteric regulation on protein surfaces.	Cell	2011
20596005	Autophagy: Snapshot of the network.	Nature	2010
20865007	An interdomain sector mediating allostery in Hsp70 molecular chaperones.	Molecular Systems Biology	2010
19703402	Protein sectors: evolutionary units of three-dimensional structure.	Cell	2009
18653755	Systems analysis of the single photon response in invertebrate photoreceptors.	Proceedings of the National Academy of Sciences of the United States of America	2008
18927392	Surface sites for engineering allosteric control in proteins.	Science	2008
18033872	Biochemistry. Signaling across the cell membrane.	Science	2007
17197416	Signal transduction pathway of TonB-dependent transporters.	Proc Natl Acad Sci U S A	2007
17923089	Dynamic scaffolding in a G protein-coupled signaling system.	Cell	2007
17437958	Elevated basal slippage mutation rates among the Canidae.	Journal of Heredity	2007
16843652	Knowledge-based potentials in protein design.	Current Opinion in Structural Biology	2006
16699502	A global analysis of cross-talk in a mammalian cellular signalling network.	Nature Cell Biology	2006
16177782	Evolutionary information for specifying a protein fold.	Nature	2005
16177795	Natural-like function in artificial WW domains.	Nature	2005
14684834	Local complexity of amino acid interactions in a protein core.	Proceedings of the National Academy of Sciences of the United States of America	2004