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Author Details

Christopher A Desjardins
Broad Institute
2005
50
32
PMIDPaper TitleJournal TitlePublished Year
35505248Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women.Nat Microbiol2022
32255488SER-109, an Investigational Microbiome Drug to Reduce Recurrence After Clostridioides difficile Infection: Lessons Learned From a Phase 2 Trial.Clin Infect Dis2021
33596852Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections.BMC Microbiol2021
31860441Landscape of gene expression variation of natural isolates of <i>Cryptococcus neoformans</i> in response to biologically relevant stresses.Microb Genom2020
30640956Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans.PLoS Pathog2019
31345251Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: progress, promise, and challenges.Genome Med2019
31048508Extensive global movement of multidrug-resistant<i>M. tuberculosis</i> strains revealed by whole-genome analysis.Thorax2019
29513784Advances in Cryptococcus genomics: insights into the evolution of pathogenesis.Mem Inst Oswaldo Cruz2018
30418868SynerClust: a highly scalable, synteny-aware orthologue clustering tool.Microb Genom2018
29775480Titan cells formation in Cryptococcus neoformans is finely tuned by environmental conditions and modulated by positive and negative genetic regulators.PLoS Pathog2018
27903602Whole-Genome Sequencing of Mycobacterium tuberculosis Provides Insight into the Evolution and Genetic Composition of Drug-Resistant Tuberculosis in Belarus.J Clin Microbiol2017
28092681Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance.Nat Genet2017
28611159Population genomics and the evolution of virulence in the fungal pathogen <i>Cryptococcus neoformans</i>.Genome Res2017
28679543Tracing Genetic Exchange and Biogeography of <i>Cryptococcus neoformans</i> var. <i>grubii</i> at the Global Population Level.Genetics2017
27988485Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses.Clin Infect Dis2017
27064254Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance.Nat Genet2016
27704050Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides.mSphere2016
27321573Baeyer-Villiger Monooxygenases EthA and MymA Are Required for Activation of Replicating and Non-replicating Mycobacterium tuberculosis Inhibitors.Cell Chem Biol2016
27572408Genomic Analysis of the Evolution of Fluoroquinolone Resistance in Mycobacterium tuberculosis Prior to Tuberculosis Diagnosis.Antimicrob Agents Chemother2016
26751217Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction.PLoS Negl Trop Dis2016
26941159Draft Genome Sequences of Two Extensively Drug-Resistant Strains of Mycobacterium tuberculosis Belonging to the Euro-American S Lineage.Genome Announc2016
25988581Fatal nosocomial MDR TB identified through routine genetic analysis and whole-genome sequencing.Emerg Infect Dis2015
26439490The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia.PLoS Genet2015
26330512Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii.mBio2015
26269794Epidemiologic Investigation of a Cluster of Neuroinvasive Bacillus cereus Infections in 5 Patients With Acute Myelogenous Leukemia.Open Forum Infect Dis2015
26418737Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal.PLoS Med2015
25968466Contrasting host-pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes.Nat Commun2015
24041793Staphylococcal enterotoxin P predicts bacteremia in hospitalized patients colonized with methicillin-resistant Staphylococcus aureus.J Infect Dis2014
23525074Genomics of Loa loa, a Wolbachia-free filarial parasite of humans.Nat Genet2013
23825666Evolutionary dynamics of the accessory genome of Listeria monocytogenes.PLoS One2013
23390597Fine-scale mapping of the Nasonia genome to chromosomes using a high-density genotyping microarray.G3 (Bethesda)2013
22354958Comparative genomics of enterococci: variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus.mBio2012
22813931Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth.Genome Res2012
22617140Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States.mBio2012
21511999Comparative functional genomics of the fission yeasts.Science2011
22675588High quality draft genome sequence of Segniliparus rugosus CDC 945(T)= (ATCC BAA-974(T)).Stand Genomic Sci2011
22046142Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.PLoS Genet2011
21931557Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development.PLoS Genet2011
20075255Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.Science2010
20529071The mushroom habitat as an ecological arena for global exchange of Wolbachia.Mol Ecol2010
20163713Accelerated microevolution in an outer membrane protein (OMP) of the intracellular bacteria Wolbachia.BMC Evol Biol2010
20167021Data mining cDNAs reveals three new single stranded RNA viruses in Nasonia (Hymenoptera: Pteromalidae).Insect Mol Biol2010
20167013Two novel proteins expressed by the venom glands of Apis mellifera and Nasonia vitripennis share an ancient C1q-like domain.Insect Mol Biol2010
20087411Recombination and its impact on the genome of the haplodiploid parasitoid wasp Nasonia.PLoS One2010
20087394Behavioral and genetic characteristics of a new species of Nasonia.Heredity (Edinb)2010
20087393The genetic basis of interspecies host preference differences in the model parasitoid Nasonia.Heredity (Edinb)2010
19116010Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps.Genome Biol2008
17594494Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus.BMC Microbiol2007
17911033Phylogeny of pteromalid parasitic wasps (Hymenoptera: Pteromalidae): initial evidence from four protein-coding nuclear genes.Mol Phylogenet Evol2007
15774035New evolutionary frontiers from unusual virus genomes.Genome Biol2005
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Collaborators

Bruce W Birren
Broad Institute of MIT and Harvard
Co-authored papers 15
John H Werren
University of Rochester
Co-authored papers 9
Brian J Haas
Broad Institute of MIT and Harvard
Co-authored papers 9
Jennifer R Wortman
Broad Institute of MIT and Harvard
Co-authored papers 6
Jeremy Zucker
Pacific Northwest National Laboratory
Co-authored papers 4
David Heiman
Co-authored papers 4
Bruce D Walker
Ragon Institute of Mass General
Co-authored papers 4
Vishvanath Nene
International Livestock Research Institute (ILRI)
Co-authored papers 3
Leo W Beukeboom
Groningen Institute for Evolutionary Life Sciences, University of Groningen
Co-authored papers 3
David W Loehlin
Williams College
Co-authored papers 3
Chinnappa D Kodira
GE Global Research Center
Co-authored papers 3
Paul A Godfrey
Institute of Technology, Broad Institute of Harvard and Massachusetts
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Oliver Niehuis
Institute of Biology I (Zoology), Albert Ludwig University Freiburg
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Thomas Schmitt
University of Wurzburg
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Phat Dang
USDA-ARS National Peanut Research Laboratory
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John K Colbourne
University of Birmingham
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Dirk C de Graaf
Ghent University
Co-authored papers 2
Michael S Gilmore
Harvard Medical School, USA Infectious Disease Institute (P.J.M.B.
Co-authored papers 2
Joshua D Gibson
University of California berkeley
Co-authored papers 2
Michael C Schatz
Johns Hopkins University
Co-authored papers 2
J??rgen Gadau
Institute for Evolution & Biodiversity, University of Munster
Co-authored papers 2
Carsten Russ
Co-authored papers 2
Tosca Koevoets
Groningen Institute for Evolutionary Life Sciences, University of Groningen Groningen
Co-authored papers 2
Bart A Pannebakker
Wageningen University & Research
Co-authored papers 2
Andrei Gabrielian
National Institutes of Allergy and Infectious Diseases
Co-authored papers 2
David M Shuker
University of St Andrews
Co-authored papers 2
Jacqueline A Lopez
University of Notre Dame
Co-authored papers 2
Michael E Clark
University of Rochester.
Co-authored papers 2
J??rgen Gadau
Arizona State University
Co-authored papers 2
Douglas W Fadrosh
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Release 1.2