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Author Details

Alistair C Darby
Institute of Infection, University of Liverpool
2000
132
38
PMIDPaper TitleJournal TitlePublished Year
37351911COVID-19 risk mitigation in reopening mass cultural events: population-based observational study for the UK Events Research Programme in Liverpool City Region.J R Soc Med2024
36624507The bovine foot skin microbiota is associated with host genotype and the development of infectious digital dermatitis lesions.Microbiome2023
37750682<i>Arsenophonus</i> symbiosis with louse flies: multiple origins, coevolutionary dynamics, and metabolic significance.mSystems2023
36988332Genomic and cytogenetic analysis of the Ceratitis capitata temperature-sensitive lethal region.G3 (Bethesda)2023
37308063Evaluating the cost implications of integrating SARS-CoV-2 genome sequencing for infection prevention and control investigation of nosocomial transmission within hospitals.J Hosp Infect2023
36969139Selecting for infectivity across metapopulations can increase virulence in the social microbe <i>Bacillus thuringiensis</i>.Evol Appl2023
37399133Metagenomics of culture isolates and insect tissue illuminate the evolution of <i>Wolbachia</i>, <i>Rickettsia</i> and <i>Bartonella</i> symbionts in <i>Ctenocephalides</i> spp. fleas.Microb Genom2023
37364376Association Between Maternal Breastmilk Microbiota Composition and Rotavirus Vaccine Response in African, Asian, and European Infants: A Prospective Cohort Study.J Infect Dis2023
36788638Timing and delivery route effects of cecal microbiome transplants on Salmonella Typhimurium infections in chickens: potential for in-hatchery delivery of microbial interventions.Anim Microbiome2023
35317206Utility of Ischemia Testing Prior to Ablation for Sustained Monomorphic Ventricular Tachycardia.J Innov Card Rhythm Manag2022
35551207Genomic diversity across the Rickettsia and 'Candidatus Megaira' genera and proposal of genus status for the Torix group.Nat Commun2022
35639883Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers.Gigascience2022
36435798Characterisation of SARS-CoV-2 genomic variation in response to molnupiravir treatment in the AGILE Phase IIa clinical trial.Nat Commun2022
35980174Recovering individual haplotypes and a contiguous genome assembly from pooled long-read sequencing of the diamondback moth (Lepidoptera: Plutellidae).G3 (Bethesda)2022
33349664Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa.Nat Microbiol2021
33627662Comparison of rhesus and cynomolgus macaques as an infection model for COVID-19.Nat Commun2021
33850582Baseline incision characteristics and early scar maturation indices following cardiac device implantation.J Arrhythm2021
33757984Covid-19: variants and vaccination.BMJ2021
33780514Dissecting the molecular diversity and commonality of bovine and human treponemes identifies key survival and adhesion mechanisms.PLoS Pathog2021
34911947Impact of maternal antibodies and microbiota development on the immunogenicity of oral rotavirus vaccine in African, Indian, and European infants.Nat Commun2021
34499854Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic.Cell2021
34555037A gene expression panel for estimating age in males and females of the sleeping sickness vector Glossina morsitans.PLoS Negl Trop Dis2021
34419391Cardiac Magnetic Resonance Assessment of Response to Cardiac Resynchronization Therapy and Programming Strategies.JACC Cardiovasc Imaging2021
34680640Isolation in Natural Host Cell Lines of <i>Wolbachia</i> Strains <i>w</i>Pip from the Mosquito <i>Culex pipiens</i> and <i>w</i>Pap from the Sand Fly <i>Phlebotomus papatasi</i>.Insects2021
34241567Inter-kingdom relationships in Crohn's disease explored using a multi-omics approach.Gut Microbes2021
34151158Complete genome characterization of human noroviruses allows comparison of minor alleles during acute and chronic infections.Access Microbiol2021
34287009Amplicon and Metagenomic Analysis of Middle East Respiratory Syndrome (MERS) Coronavirus and the Microbiome in Patients with Severe MERS.mSphere2021
33479218White pupae phenotype of tephritids is caused by parallel mutations of a MFS transporter.Nat Commun2021
31567164Human papillomavirus infection and cervical dysplasia in HIV-positive women: potential role of the vaginal microbiota.AIDS2020
31876614Characterization of Circulating Clostridium difficile Strains, Host Response and Intestinal Microbiome in Hospitalized Children With Diarrhea.Pediatr Infect Dis J2020
31864974CMR DENSE and the Seattle Heart Failure Model Inform Survival and Arrhythmia Risk After CRT.JACC Cardiovasc Imaging2020
31922467Large-scale and significant expression from pseudogenes in <i>Sodalis glossinidius</i> - a facultative bacterial endosymbiont.Microb Genom2020
31830246Functional Genomics of a Symbiotic Community: Shared Traits in the Olive Fruit Fly Gut Microbiota.Genome Biol Evol2020
32068830Insect-Symbiont Gene Expression in the Midgut Bacteriocytes of a Blood-Sucking Parasite.Genome Biol Evol2020
32005933Trypanosomatid parasite dynamically changes the transcriptome during infection and modifies honey bee physiology.Commun Biol2020
33295865Diminutive, degraded but dissimilar: <i>Wolbachia</i> genomes from filarial nematodes do not conform to a single paradigm.Microb Genom2020
32630209Isolation and Propagation of Laboratory Strains and a Novel Flea-Derived Field Strain of <i>Wolbachia</i> in Tick Cell Lines.Microorganisms2020
32592387AcGI1, a novel genomic island carrying antibiotic resistance integron In687 in multidrug resistant Achromobacter xylosoxidans in a teaching hospital in Thailand.FEMS Microbiol Lett2020
32209690The Hypercomplex Genome of an Insect Reproductive Parasite Highlights the Importance of Lateral Gene Transfer in Symbiont Biology.mBio2020
32127550Intermittent Lactobacilli-containing Vaginal Probiotic or Metronidazole Use to Prevent Bacterial Vaginosis Recurrence: A Pilot Study Incorporating Microscopy and Sequencing.Sci Rep2020
31404542Impact of oral metronidazole treatment on the vaginal microbiota and correlates of treatment failure.Am J Obstet Gynecol2020
30602581A Tale of Three Species: Adaptation of Sodalis glossinidius to Tsetse Biology, <i>Wigglesworthia</i> Metabolism, and Host Diet.mBio2019
33499969Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand.Anim Microbiome2019
31676474"Bowel on the Bench": Proof of Concept of a Three-Stage, <i>In Vitro</i> Fermentation Model of the Equine Large Intestine.Appl Environ Microbiol2019
30197267Multi-locus sequence typing of Ixodes ricinus and its symbiont Candidatus Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland.Ticks Tick Borne Dis2019
31474375The use of non-invasive mapping in persistent AF to predict acute procedural outcome.J Electrocardiol2019
31624158High-Quality Draft Genome Sequence and Annotation of the Basidiomycete Yeast <i>Sporisorium graminicola</i> CBS10092, a Producer of Mannosylerythritol Lipids.Microbiol Resour Announc2019
31364706Draft Genome of Busseola fusca, the Maize Stalk Borer, a Major Crop Pest in Sub-Saharan Africa.Genome Biol Evol2019
31249384DNA extraction and amplicon production strategies deeply infâ¿¿luence the outcome of gut mycobiome studies.Sci Rep2019
30809447The draft genome of strain <i>c</i>Cpun from biting midges confirms insect <i>Cardinium</i> are not a monophyletic group and reveals a novel gene family expansion in a symbiont.PeerJ2019
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Collaborators

Earlham Institute
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Institute of Infection, University of Liverpool
Co-authored papers 6
Xi'an Jiaotong-Liverpool University
Co-authored papers 4
Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht
Co-authored papers 4
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Co-authored papers 3
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Co-authored papers 3
University of Birmingham
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University of Rochester
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Universite de Poitiers, UMR CNRS 7267
Co-authored papers 3
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Co-authored papers 2
Department of Biomedical and Pharmaceutical Sciences, University of Rhode Island
Co-authored papers 2
University of Illinois at Champaign-Urbana
Co-authored papers 2
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Co-authored papers 2
McGill University
Co-authored papers 2
Oxford Brookes University
Co-authored papers 2
University of Colorado Anschutz Medical Campus
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University of Rochester.
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