Author details

Full Name

Todd A Richmond

Affiliation

ORCID

Career Start Year

1994

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
33127576	Comparative analysis of genome-wide DNA methylation identifies patterns that associate with conserved transcriptional programs in osteosarcoma.	Bone	2022
33863344	Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.	Genome Biol	2021
33846644	Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology.	Nat Biotechnol	2021
33785770	A domestic cat whole exome sequencing resource for trait discovery.	Sci Rep	2021
33863366	A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency.	Genome Biol	2021
32256442	Germline Genetic Risk Variants for Progressive Multifocal Leukoencephalopathy.	Frontiers in Neurology	2020
30715311	Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat.	GigaScience	2019
30329222	Long-read sequence capture of the haemoglobin gene clusters across codfish species.	Molecular Ecology Resources	2019
29656895	Tracking Cancer Evolution Reveals Constrained Routes to Metastases: TRACERx Renal.	Cell	2018
29224155	Targeted Bisulfite Sequencing Using the SeqCap Epi Enrichment System.	Methods in Molecular Biology	2018
26721485	Targeted LncRNA Sequencing with the SeqCap RNA Enrichment System.	Methods in Molecular Biology	2016
26021296	Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants.	Nat Commun	2015
33228291	Southern-by-Sequencing: A Robust Screening Approach for Molecular Characterization of Genetically Modified Crops.	Plant Genome	2015
25813045	Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.	Nucleic Acids Research	2015
26219997	Erratum: Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants.	Nat Commun	2015
26637943	Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency.		2015
24705123	Proteome-wide epitope mapping of antibodies using ultra-dense peptide arrays.	Mol Cell Proteomics	2014
25527708	Genetic perturbation of the maize methylome.	Plant Cell	2014
24947485	Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.	Plant J	2014
23889683	Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.	Plant Journal	2013
23758725	Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.		2013
23894464	An integrated tool to study MHC region: accurate SNV detection and HLA genes typing in human MHC region using targeted high-throughput sequencing.	PLoS ONE	2013
23893877	Detection of clinically relevant copy number variants with whole-exome sequencing.	Hum Mutat	2013
22908036	Microarray-based capture of novel expressed cell type-specific transfrags (CoNECT) to annotate tissue-specific transcription in Drosophila melanogaster.	G3 (Bethesda)	2012
22510280	Identification of somatic mutations in non-small cell lung carcinomas using whole-exome sequencing.	Carcinogenesis	2012
22703335	Targeted re-sequencing of the allohexaploid wheat exome.	Plant Biotechnol J	2012
22731681	Changes in genome content generated via segregation of non-allelic homologs.	Plant Journal	2012
22037309	Somatic retrotransposition alters the genetic landscape of the human brain.	Nature	2011
21115807	The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82.	Plant Physiology	2011
21917142	Mutation discovery in mice by whole exome sequencing.	Genome Biol	2011
20230488	Repeat subtraction-mediated sequence capture from a complex genome.	Plant Journal	2010
21152036	High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes.	PLoS ONE	2010
20565776	Whole exome capture in solution with 3 Gbp of data.	Genome Biol	2010
19956538	Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content.	PLoS Genetics	2009
19629596	Mutation discovery in the mouse using genetically guided array capture and resequencing.	Mammalian Genome	2009
19386619	High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers.	Nucleic Acids Res	2009
19651600	Acquired copy number alterations in adult acute myeloid leukemia genomes.	Proc Natl Acad Sci U S A	2009
18353789	An analytical pipeline for genomic representations used for cytosine methylation studies.	Bioinformatics	2008
18334530	wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data.	Nucleic Acids Res	2008
18482458	Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays.	BMC Microbiol	2008
16971479	Ultra-high resolution array painting facilitates breakpoint sequencing.	J Med Genet	2007
17267812	Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization.	Genome Research	2007
17984520	Methods in high-resolution, array-based comparative genomic hybridization.	Methods in Molecular Biology	2007
17206864	A high-resolution map of segmental DNA copy number variation in the mouse genome.	PLoS Genet	2007
17934467	Direct selection of human genomic loci by microarray hybridization.	Nat Methods	2007
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
16824183	Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants.	Plant J	2006
16702559	Complex genomic alterations and gene expression in acute lymphoblastic leukemia with intrachromosomal amplification of chromosome 21.	Proceedings of the National Academy of Sciences of the United States of America	2006
16809668	Comparative isoschizomer profiling of cytosine methylation: the HELP assay.	Genome Res	2006
16954542	Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.	Genome Res	2006