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Author Details

Han-Yu Chuang
Departments of Bioinformatics and Clinical Genomics, Illumina Inc.
2005
18
16
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38053317Genomic analysis across 53 canine cancer types reveals novel mutations and high clinical actionability potential.Vet Comp Oncol2024
30304370Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data.Bioinformatics2019
27903644A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree.Genome Res2017
28382660The effects of threshold inspiratory muscle training in patients with chronic obstructive pulmonary disease: A randomised experimental study.J Clin Nurs2017
28536309Development and Validation of an Ultradeep Next-Generation Sequencing Assay for Testing of Plasma Cell-Free DNA from Patients with Advanced Cancer.Clin Cancer Res2017
25266161Open-access synthetic spike-in mRNA-seq data for cancer gene fusions.BMC Genomics2014
23509297Whole-genome haplotyping by dilution, amplification, and sequencing.Proc Natl Acad Sci U S A2013
23674306Proteome-wide discovery of mislocated proteins in cancer.Genome Res2013
23736529Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms.Bioinformatics2013
22403610ROR1 is expressed in human breast cancer and associated with enhanced tumor-cell growth.PLoS One2012
22837534Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression.Blood2012
20604711A decade of systems biology.Annu Rev Cell Dev Biol2010
20956327B-cell activating factor and v-Myc myelocytomatosis viral oncogene homolog (c-Myc) influence progression of chronic lymphocytic leukemia.Proc Natl Acad Sci U S A2010
19755673Chronic lymphocytic leukemia of Emu-TCL1 transgenic mice undergoes rapid cell turnover that can be offset by extrinsic CD257 to accelerate disease progression.Blood2009
18989396Inferring pathway activity toward precise disease classification.PLoS Comput Biol2008
18836191Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species.Nucleic Acids Res2008
17940530Network-based classification of breast cancer metastasis.Mol Syst Biol2007
16214803The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.Nucleic Acids Res2005
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Collaborators

Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 6
Thomas J Kipps
University of California San Diego
Co-authored papers 4
Jian-Bing Fan
Nanfang Hospital and Basic Medical College, Southern Medical University
Co-authored papers 2
Doheon Lee
Korea Advanced Institute of Science and Technology
Co-authored papers 2
Eunjung Lee
Boston Children's Hospital
Co-authored papers 2
Brandy Klotzle
Departments of Bioinformatics and Clinical Genomics, Illumina Inc.
Co-authored papers 2
Michael Karin
Co-authored papers 2
Kiyoung Lee
Samsung Advanced Institute of Technology (SAIT), Samsung Electronics Co. Ltd.
Co-authored papers 2
Michael A Eberle
Illumina Inc.
Co-authored papers 2
Bonghee Lee
Lee Gil Ya Cancer and Diabetes Institute, Gachon University
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Marina Bibikova
Departments of Bioinformatics and Clinical Genomics, Illumina Inc.
Co-authored papers 2
Elliott H Margulies
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
Yu-Tsueng Liu
University of California San Diego
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Hye-Young Shin
Department of Food Science and Biotechnology, Kangwon National University
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Peter Krusche
Novartis Pharma AG
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John D Carpten
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Winnie S Liang
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Sante Gnerre
Co-authored papers 1
Folker Meyer
Institute for Artificial Intelligence, University of Duisburg-Essen
Co-authored papers 1
Sun Ha Paek
Seoul National University College of Medicine
Co-authored papers 1
Sara A Byron
Co-authored papers 1
Katherine Licon
University of California San Diego
Co-authored papers 1
Sean Humphray
Illumina Ltd.
Co-authored papers 1
Laura Z Rassenti
University of California San Diego
Co-authored papers 1
Mostafa Ronaghi
Co-authored papers 1
Val??rie de Cr??cy-Lagard
University of Florida
Co-authored papers 1
Jong-Won Kim
Samsung Medical Center, Sungkyunkwan University School of Medicine
Co-authored papers 1
Heiko Neuweger
Co-authored papers 1
Min-Kyung Sung
California Institute of Technology
Co-authored papers 1
David R Bentley
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Release 1.2