Author details

Full Name

Manfred Grabherr

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36991682	: Unsupervised Classification of Electroencephalographic Data.		2023
35533190	EZTraits: A programmable tool to evaluate multi-site deterministic traits.	PLoS ONE	2022
36284273	SumStatsRehab: an efficient algorithm for GWAS summary statistics assessment and restoration.	BMC Bioinformatics	2022
35808456	Flexible Machine Learning Algorithms for Clinical Gait Assessment Tools.	Sensors	2022
35727987	Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests.	Proceedings of the National Academy of Sciences of the United States of America	2022
33594001	Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce.	mSystems	2021
31992756	Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei.	Scientific Reports	2020
31022588	Analyzing DNA methylation patterns in subjects diagnosed with schizophrenia using machine learning methods.	Journal of Psychiatric Research	2019
31776441	Author Correction: Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes.	Scientific Reports	2019
31823727	Investigation of the host transcriptional response to intracellular bacterial infection using Dictyostelium discoideum as a host model.	BMC Genomics	2019
31273253	Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes.	Scientific Reports	2019
29695257	Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction.	BMC Genomics	2018
30587115	ACES: a machine learning toolbox for clustering analysis and visualization.	BMC Genomics	2018
29966484	Global characterization of the Dicer-like protein DrnB roles in miRNA biogenesis in the social amoeba Dictyostelium discoideum.	RNA Biology	2018
30340386	Special Issue Introduction: The Wonders and Mysteries Next Generation Sequencing Technologies Help Reveal.	Genes	2018
30373829	Functional and evolutionary genomic inferences in through genome and population sequencing of American and European aspen.	Proceedings of the National Academy of Sciences of the United States of America	2018
28115385	Interactions of Freshwater Cyanobacteria with Bacterial Antagonists.	Applied and Environmental Microbiology	2017
28774266	Evolution of the p53-MDM2 pathway.	BMC Evolutionary Biology	2017
28464826	microTaboo: a general and practical solution to the k-disjoint problem.	BMC Bioinformatics	2017
28768481	PiiL: visualization of DNA methylation and gene expression data in gene pathways.	BMC Genomics	2017
28879061	A practical guide to build assemblies for single tissues of non-model organisms: the example of a Neotropical frog.	PeerJ	2017
28878825	RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study.	BioData Mining	2017
28615067	Correspondence on Lovell et al.: identification of chicken genes previously assumed to be evolutionarily lost.		2017
29228011	Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells.	PLoS Neglected Tropical Diseases	2017
29273779	Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration.	Nature Communications	2017
27663458	Combinatorial identification of DNA methylation patterns over age in the human brain.	BMC Bioinformatics	2016
27015092	Coordinated Changes in Gene Expression Throughout Encystation of Giardia intestinalis.	PLoS Neglected Tropical Diseases	2016
25142400	Genome and physiology of the ascomycete filamentous fungus Xeromyces bisporus, the most xerophilic organism isolated to date.	Environmental Microbiology	2015
25661541	Whiteboard: a framework for the programmatic visualization of complex biological analyses.		2015
25686609	Evolution of Darwin's finches and their beaks revealed by genome sequencing.	Nature	2015
25720678	Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum.	Genome Announc	2015
25677915	Function of Isolated Pancreatic Islets From Patients at Onset of Type 1 Diabetes: Insulin Secretion Can Be Restored After Some Days in a Nondiabetogenic Environment In Vitro: Results From the DiViD Study.		2015
26413905	Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies).	PLoS One	2015
24976580	A universal genomic coordinate translator for comparative genomics.	BMC Bioinformatics	2014
24948738	The genomic landscape underlying phenotypic integrity in the face of gene flow in crows.	Science	2014
24625832	An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts.	PLoS One	2014
24976859	Modular and configurable optimal sequence alignment software: Cola.	Source Code for Biology and Medicine	2014
23706020	Unsupervised genome-wide recognition of local relationship patterns.	BMC Genomics	2013
23845962	De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.	Nat Protoc	2013
24277832	Broad-scale phylogenomics provides insights into retrovirus-host evolution.	Proceedings of the National Academy of Sciences of the United States of America	2013
24225116	Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues.	BMC Biotechnology	2013
22095054	Artificially designed promoters: understanding the role of spatial features and canonical binding sites in transcription.		2012
22481358	The genomic basis of adaptive evolution in threespine sticklebacks.	Nature	2012
23134729	Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring.	Proc Natl Acad Sci U S A	2012
21590409	Genome sequencing and assembly.	Methods in Molecular Biology	2011
21536894	Obligate biotrophy features unraveled by the genomic analysis of rust fungi.	Proc Natl Acad Sci U S A	2011
21625601	Exploiting nucleotide composition to engineer promoters.	PLoS One	2011
21572440	Full-length transcriptome assembly from RNA-Seq data without a reference genome.	Nat Biotechnol	2011
21623353	Computational methods for transcriptome annotation and quantification using RNA-seq.	Nature Methods	2011
21881562	The genome of the green anole lizard and a comparative analysis with birds and mammals.	Nature	2011