Author details

Full Name

Gang Fang

Affiliation

Icahn School of Medicine at Mount Sinai

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

Gloria M Sheynkman (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36653550	Navigating the pitfalls of mapping DNA and RNA modifications.	Nat Rev Genet	2023
37592224	An artificial intelligence-based ecological index for prognostic evaluation of colorectal cancer.	BMC Cancer	2023
35140746	Predicting Ischemic Stroke Outcome Using Deep Learning Approaches.	Front Genet	2022
35368670	An Integrated Algorithm for Designing Oligodeoxynucleotides for Gene Synthesis.	Front Genet	2022
36479244	A depth-first search algorithm for oligonucleotide design in gene assembly.	Front Genet	2022
35961013	A roadmap for the functional annotation of protein families: a community perspective.	Database (Oxford)	2022
35045824	Detect the early-warning signals of diseases based on signaling pathway perturbations on a single sample.	BMC Bioinformatics	2022
35113693	Critical assessment of DNA adenine methylation in eukaryotes using quantitative deconvolution.	Science	2022
32417228	Conserved DNA Methyltransferases: A Window into Fundamental Mechanisms of Epigenetic Regulation in Bacteria.	Trends Microbiol	2021
33820988	Discovering multiple types of DNA methylation from bacteria and microbiome using nanopore sequencing.	Nat Methods	2021
32161195	Integrative study of the upper and lower airway microbiome and transcriptome in asthma.	JCI Insight	2020
31768029	Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis.	Nat Microbiol	2020
32629359	A machine learning approach to select features important to stroke prognosis.	Comput Biol Chem	2020
32894041	A systematic study of critical miRNAs on cells proliferation and apoptosis by the shortest path.	BMC Bioinformatics	2020
32209118	Using the spike protein feature to predict infection risk and monitor the evolutionary dynamic of coronavirus.	Infect Dis Poverty	2020
32296462	A Systematic Way to Infer the Regulation Relations of miRNAs on Target Genes and Critical miRNAs in Cancers.	Front Genet	2020
30546107	Deciphering bacterial epigenomes using modern sequencing technologies.	Nat Rev Genet	2019
31784728	Neuronal impact of patient-specific aberrant NRXN1Î± splicing.	Nat Genet	2019
31751888	Efficient Gaussian sample specific network marker discovery and drug enrichment analysis validation.	Comput Biol Chem	2019
31537791	Discovering genetic interactions bridging pathways in genome-wide association studies.	Nat Commun	2019
29227468	Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.	Nat Biotechnol	2018
29966263	Scoring Amino Acid Mutations to Predict Avian-to-Human Transmission of Avian Influenza Viruses.	Molecules	2018
29979655	KBase: The United States Department of Energy Systems Biology Knowledgebase.	Nat Biotechnol	2018
29764913	Mapping and characterizing N6-methyladenine in eukaryotic genomes using single-molecule real-time sequencing.	Genome Res	2018
29509873	MatrixEpistasis: ultrafast, exhaustive epistasis scan for quantitative traits with covariate adjustment.	Bioinformatics	2018
28877483	Dysregulation of miRNA-9 in a Subset of Schizophrenia Patient-Derived Neural Progenitor Cells.	Cell Rep	2017
28476974	Use of processed data to design an orderly logic gate to construct plasmids in GenoCAD.	IET Syst Biol	2017
29036490	Optimizing DNA assembly based on statistical language modelling.	Nucleic Acids Res	2017
27027282	DNA methylation on N(6)-adenine in mammalian embryonic stem cells.	Nature	2016
27117414	Dysregulation of miRNA-9 in a Subset of Schizophrenia Patient-Derived Neural Progenitor Cells.	Cell Rep	2016
27435445	Unknown unknowns: essential genes in quest for function.	Microb Biotechnol	2016
27510566	Pangolin genomes and the evolution of mammalian scales and immunity.	Genome Res	2016
24686136	Phenotypic differences in hiPSC NPCs derived from patients with schizophrenia.	Mol Psychiatry	2015
26657207	Correction: A Cytosine Methytransferase Modulates the Cell Envelope Stress Response in the Cholera Pathogen.	PLoS Genet	2015
26485546	Increased abundance of translation machinery in stem cell-derived neural progenitor cells from four schizophrenia patients.	Transl Psychiatry	2015
26324280	Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia.	Antimicrob Agents Chemother	2015
26588462	A Cytosine Methyltransferase Modulates the Cell Envelope Stress Response in the Cholera Pathogen [corrected].	PLoS Genet	2015
26501180	Perinatal stress effects on later anxiety and hormone secretion in male mandarin voles.	Behav Neurosci	2015
26074426	Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes.	Nat Commun	2015
25925571	GenoLIB: a database of biological parts derived from a library of common plasmid features.	Nucleic Acids Res	2015
25708228	Altered WNT Signaling in Human Induced Pluripotent Stem Cell Neural Progenitor Cells Derived from Four Schizophrenia Patients.	Biol Psychiatry	2015
25591662	SubPatCNV: approximate subspace pattern mining for mapping copy-number variations.	BMC Bioinformatics	2015
24445323	Autotransporters but not pAA are critical for rabbit colonization by Shiga toxin-producing Escherichia coli O104:H4.	Nat Commun	2014
25253358	Detecting epigenetic motifs in low coverage and metagenomics settings.	BMC Bioinformatics	2014
25164755	Comparative analysis of the transcriptome across distant species.	Nature	2014
23093720	Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases.	Genome Res	2013
24179856	Complex biomarker discovery in neuroimaging data: Finding a needle in a haystack.	Neuroimage Clin	2013
23829427	Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution.	BMC Genomics	2013
23516341	Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic.	PLoS Comput Biol	2013
23219343	From essential to persistent genes: a functional approach to constructing synthetic life.	Trends Genet	2013

1 - 50 of 69

Corey M Hudson

Informatics Institute, University of Missouri

Career Start Year 2011

Number of shared co-authors 1

Nozomu Yachie

The University of British Columbia

Career Start Year 2006

Number of shared co-authors 0

Christopher J Fields

University of Illinois Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 1

Christopher E Mason

Feil Family Brain and Mind Research Institute.

Career Start Year 2004

Number of shared co-authors 16

Sarath Chandra Janga

Indiana University

Career Start Year 2004

Number of shared co-authors 0

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 0

Lachlan J M Coin

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne

Career Start Year 2003

Number of shared co-authors 4

Ying Xu

The China-Japan Union Hospital, Jilin University

Career Start Year 2002

Number of shared co-authors 2

Katherine S Pollard

Gladstone Institutes

Career Start Year 2002

Number of shared co-authors 13

Jun Wang

Zhongnan Hospital of Wuhan University

Career Start Year 2002

Number of shared co-authors 13

Eran Segal

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 5

Jun Yu

Beijing Institute of Genomics, Chinese Academy of Sciences

Career Start Year 2001

Number of shared co-authors 6

Karen Moore

University of Exeter

Career Start Year 2000

Number of shared co-authors 2

Jeong-Hyeon Choi

National Marine Biodiversity Institute of Korea

Career Start Year 2000

Number of shared co-authors 4

Karsten Hokamp

Smurfit Institute of Genetics, Trinity College of Dublin

Career Start Year 1999

Number of shared co-authors 5

C Titus Brown

University of California davis

Career Start Year 1999

Number of shared co-authors 7

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 2

Ian Korf

University of California davis

Career Start Year 1998

Number of shared co-authors 10

Lee Murphy

Edinburgh Clinical Research Facility, University of Edinburgh

Career Start Year 1998

Number of shared co-authors 8

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 1

Christopher T Workman

Technical University of Denmark

Career Start Year 1995

Number of shared co-authors 0

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 5

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 11

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 6

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 26

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 11

Mark D Adams

Case Western Reserve University School of Medicine

Career Start Year 1989

Number of shared co-authors 9

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 22

Owen White

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1988

Number of shared co-authors 16

George M Church

Harvard Medical School

Career Start Year 1977

Number of shared co-authors 14

row(s) 1 - 30 of 30

Eric E Schadt

Icahn School of Medicine at Mount Sinai

Co-authored papers 15

Antoine Danchin

University of Hong Kong

Co-authored papers 11

Mark Gerstein

Yale University

Co-authored papers 9

Robert Sebra

Icahn School of Medicine at Mount Sinai

Co-authored papers 7

Kristen J Brennand

Co-authored papers 6

Judith L Rapoport

National Institute of Mental Health, National Institutes of Health

Co-authored papers 4

Hardik Shah

Co-authored papers 3

Gerard Cagney

Conway Institute of Biomedical and Biomolecular Sciences, University College Dublin

Co-authored papers 3

Brian Van Ness

University of Minnesota

Co-authored papers 3

Roger P Alexander

Co-authored papers 3

Ali Bashir

Google Accelerated Science Team, Google Inc

Co-authored papers 3

Peter Gochman

National Institute of Mental Health, National Institutes of Health

Co-authored papers 3

Xuegong Zhang

Co-authored papers 2

Chad L Myers

University of Minnesota - Twin Cities

Co-authored papers 2

Harm van Bakel

Icahn School of Medicine at Mount Sinai

Co-authored papers 2

Pamela Sklar

Co-authored papers 2

Ben Readhead

Co-authored papers 2

Adam Frankish

Co-authored papers 2

Douglas M Ruderfer

Vanderbilt University Medical Center

Co-authored papers 2

Philip Cayting

Co-authored papers 2

Bin Zhang

Graduate School of Medicine, The University of Tokyo

Co-authored papers 2

Steven E Brenner

University of California berkeley

Co-authored papers 2

Manuel Mattheisen

Dalhousie University

Co-authored papers 2

Jessica S Johnson

Co-authored papers 2

David Vallenet

Institut Francois Jacob, CNRS, Universite d'Evry, Universite Paris-Saclay

Co-authored papers 2

Koon-Kiu Yan

Co-authored papers 2

Joel Rozowsky

Co-authored papers 2

Mads E Hauberg

Co-authored papers 2

Erin Flaherty

Co-authored papers 2

Ying-Chih Wang

Co-authored papers 2

1 - 30

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