Author details

Full Name

Charles Auffray

Affiliation

European Institute for Systems Biology and Medicine

ORCID

Career Start Year

1978

Papers

282

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37163754	Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk.	Am J Respir Crit Care Med	2023
37146653	The role of inflammation in anxiety and depression in the European U-BIOPRED asthma cohorts.	Brain Behav Immun	2023
36968829	Systems prediction of chronic lung allograft dysfunction: Results and perspectives from the Cohort of Lung Transplantation and Systems prediction of Chronic Lung Allograft Dysfunction cohorts.	Front Med (Lausanne)	2023
34737220	Plasma proteins elevated in severe asthma despite oral steroid use and unrelated to Type-2 inflammation.	Eur Respir J	2022
35474304	Clinical and transcriptomic features of persistent exacerbation-prone severe asthma in U-BIOPRED cohort.	Clin Transl Med	2022
36563404	GraphML-SBGN bidirectional converter for metabolic networks.	J Integr Bioinform	2022
35904980	Asthma and Wheeze Severity and the Oropharyngeal Microbiota in Children and Adolescents.	Ann Am Thorac Soc	2022
36126800	The electron as a self-organising entity in physics and biology.	Prog Biophys Mol Biol	2022
34824056	A multi-omics approach to delineate sputum microbiome-associated asthma inflammatory phenotypes.	Eur Respir J	2022
33008937	Instability of sputum molecular phenotypes in U-BIOPRED severe asthma.	Eur Respir J	2021
33921621	The Role of Artificial Intelligence in Managing Multimorbidity and Cancer.	J Pers Med	2021
33918214	Personalized Clinical Phenotyping through Systems Medicine and Artificial Intelligence.	J Pers Med	2021
34939300	COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.	Mol Syst Biol	2021
34664389	COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.	Mol Syst Biol	2021
33309742	AsthmaMap: An interactive knowledge repository for mechanisms of asthma.	J Allergy Clin Immunol	2021
33010165	Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps.	Bioinformatics	2021
32865817	Type 2-low asthma phenotypes by integration of sputum transcriptomics and serum proteomics.	Allergy	2021
30289443	Human-like layout algorithms for signalling hypergraphs: outlining requirements.	Brief Bioinform	2020
32075696	Towards a European health research and innovation cloud (HRIC).	Genome Med	2020
33148605	Informing epidemic (research) responses in a timely fashion by knowledge management - a Zika virus use case.	Biol Open	2020
32838253	Communicating in a public health crisis.	Lancet Digit Health	2020
32678106	Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.	Sci Data	2020
32371892	COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.	Sci Data	2020
31506971	Blood eosinophil count and airway epithelial transcriptome relationships in COPD versus asthma.	Allergy	2020
29684165	Navigating the disease landscape: knowledge representations for contextualizing molecular signatures.	Brief Bioinform	2019
31148503	Prenatal Particulate Air Pollution and DNA Methylation in Newborns: An Epigenome-Wide Meta-Analysis.	Environ Health Perspect	2019
30767786	Ten years of Genome Medicine.	Genome Med	2019
30998987	IL-17-high asthma with features of a psoriasis immunophenotype.	J Allergy Clin Immunol	2019
31023846	Epithelial dysregulation in obese severe asthmatics with gastro-oesophageal reflux.	Eur Respir J	2019
30961953	Sputum proteomic signature of gastro-oesophageal reflux in patients with severe asthma.	Respir Med	2019
30928653	Stratification of asthma phenotypes by airway proteomic signatures.	J Allergy Clin Immunol	2019
30578390	"T2-high" in severe asthma related to blood eosinophil, exhaled nitric oxide andÂ serum periostin.	Eur Respir J	2019
30667542	Contribution of airway eosinophils in airway wall remodeling in asthma: Role of MMP-10 and MET.	Allergy	2019
30529449	Identification and prospective stability of electronic nose (eNose)-derived inflammatory phenotypes in patients with severe asthma.	J Allergy Clin Immunol	2019
29688273	Community-driven roadmap for integrated disease maps.	Brief Bioinform	2019
28528200	Sputum transcriptomics reveal upregulation of IL-1 receptor family members in patients with severe asthma.	J Allergy Clin Immunol	2018
30240401	Enhanced oxidative stress in smoking and ex-smoking severe asthma in the U-BIOPRED cohort.	PLoS One	2018
30133857	AsthmaMap: An expert-driven computational representation of disease mechanisms.	Clin Exp Allergy	2018
29872544	Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.	NPJ Syst Biol Appl	2018
29843806	A computational framework for complex disease stratification from multiple large-scale datasets.	BMC Syst Biol	2018
29496485	DNA methylation in childhood asthma: an epigenome-wide meta-analysis.	Lancet Respir Med	2018
29737851	Large-Scale Label-Free Quantitative Mapping of the Sputum Proteome.	J Proteome Res	2018
29650557	Sputum proteomics and airway cell transcripts of current and ex-smokers with severe asthma in U-BIOPRED: an exploratory analysis.	Eur Respir J	2018
28756296	Pathway discovery using transcriptomic profiles in adult-onset severe asthma.	J Allergy Clin Immunol	2018
27580351	A Transcriptome-driven Analysis of Epithelial Brushings and Bronchial Biopsies to Define Asthma Phenotypes in U-BIOPRED.	Am J Respir Crit Care Med	2017
28183433	Mechanisms of the Development of Allergy (MeDALL): Introducing novel concepts in allergy phenotypes.	J Allergy Clin Immunol	2017
28179442	T-helper cell type 2 (Th2) and non-Th2 molecular phenotypes of asthma using sputum transcriptomics in U-BIOPRED.	Eur Respir J	2017
29029245	Host Transcription Profile in Nasal Epithelium and Whole Blood of Hospitalized Children Under 2 Years of Age With Respiratory Syncytial Virus Infection.	J Infect Dis	2017
28954779	Transcriptomic gene signatures associated with persistent airflow limitation in patients with severe asthma.	Eur Respir J	2017
28598986	Computational analysis of multimorbidity between asthma, eczema and rhinitis.	PLoS One	2017

1 - 50 of 282

Steffen M??ller

Rostock University Medical Center

Career Start Year 1999

Number of shared co-authors 4

Alexandre Montpetit

McGill University and Genome Quebec Innovation Centre

Career Start Year 1998

Number of shared co-authors 18

Jared C Roach

Institute for Systems Biology

Career Start Year 1995

Number of shared co-authors 2

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 31

Alejandro A Sch??ffer

National Cancer Institute, National Institutes of Health

Career Start Year 1993

Number of shared co-authors 2

Manuel L Gonzalez-Garay

College of Medicine, University of Arizona

Career Start Year 1992

Number of shared co-authors 6

Tyra G Wolfsberg

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1992

Number of shared co-authors 2

Ruth C Lovering

University College London, Institute for Cardiovascular Science

Career Start Year 1991

Number of shared co-authors 30

Francisco M De La Vega

Stanford University School of Medicine

Career Start Year 1991

Number of shared co-authors 7

Christopher Dubay

Earle A. Chiles Research Institute, Providence Portland Medical Center

Career Start Year 1989

Number of shared co-authors 2

John D McPherson

Ontario Institute for Cancer Research

Career Start Year 1986

Number of shared co-authors 37

Jiannis Ragoussis

McGill University

Career Start Year 1986

Number of shared co-authors 8

David L Adelson

University of Adelaide

Career Start Year 1985

Number of shared co-authors 2

Eric D Green

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1984

Number of shared co-authors 35

Richard H Scheuermann

J. Craig Venter Institute

Career Start Year 1983

Number of shared co-authors 14

Michael Dean

National Cancer Institute

Career Start Year 1980

Number of shared co-authors 6

Robert M Stephens

Frederick National Laboratory for Cancer Research, Inc.

Career Start Year 1980

Number of shared co-authors 2

Brian Seed

Center for Computational and Integrative Biology, Massachusetts General Hospital

Career Start Year 1980

Number of shared co-authors 1

Christian J Stoeckert

Perelman School of Medicine, University of Pennsylvania

Career Start Year 1980

Number of shared co-authors 12

Mary M Y Waye

The Chinese University of Hong Kong

Career Start Year 1979

Number of shared co-authors 14

Jorge Zamora

Universidade de Santiago de Compostela

Career Start Year 1979

Number of shared co-authors 9

Michael F Seldin

University of California davis

Career Start Year 1978

Number of shared co-authors 6

Peter J Munson

and Blood Institute, National Institutes of Health

Career Start Year 1978

Number of shared co-authors 9

Francis S Collins

University of Michigan ann arbor

Career Start Year 1978

Number of shared co-authors 50

Kim M Summers

Mater Research Institute-University of Queensland, Translational Research Institute

Career Start Year 1977

Number of shared co-authors 13

Paul Denny

European Bioinformatics Institute

Career Start Year 1977

Number of shared co-authors 10

Donna R Maglott

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1976

Number of shared co-authors 25

Louise C Showe

The Wistar Institute

Career Start Year 1975

Number of shared co-authors 1

Sean Davis

Johns Hopkins School of Medicine, National Cancer Institute, Princeton University, University of Colorado Anschutz Medical Campus, University of Pittsburgh, University of Washington

Career Start Year 1974

Number of shared co-authors 15

Alan F Scott

Johns Hopkins University School of Medicine

Career Start Year 1972

Number of shared co-authors 4

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