Author details

Full Name

Manasa Ramakrishna

Affiliation

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
32651564	Efficient recovery of the RNA-bound proteome and protein-bound transcriptome using phase separation (OOPS).	Nat Protoc	2020
31969649	Biotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions.	Commun Biol	2020
31755249	The cell stress response: extreme times call for post-transcriptional measures.	Wiley interdisciplinary reviews. RNA	2020
30988298	Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation.	Nat Commun	2019
30607034	Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS).	Nat Biotechnol	2019
31123356	Author Correction: Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS).	Nat Biotechnol	2019
29341429	Trans-acting translational regulatory RNA binding proteins.	Wiley Interdiscip Rev RNA	2018
30169671	Identification of the RNA polymerase I-RNA interactome.	Nucleic Acids Res	2018
28288110	HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures.	Nat Med	2017
28329761	Somatic mutations reveal asymmetric cellular dynamics in the early human embryo.	Nature	2017
27498871	Direct Transcriptional Consequences of Somatic Mutation in Breast Cancer.	Cell Rep	2016
27197245	Corrigendum: Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells.	Genome Res	2016
27136393	The topography of mutational processes in breast cancer genomes.	Nat Commun	2016
27135926	Landscape of somatic mutations in 560 breast cancer whole-genome sequences.	Nature	2016
27615322	Mutational signatures of ionizing radiation in second malignancies.	Nat Commun	2016
26018901	Corrigendum: analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue.	Nat Genet	2015
25642631	Combined hereditary and somatic mutations of replication error repair genes result in rapid onset of ultra-hypermutated cancers.	Nat Genet	2015
25963125	Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells.	Genome Res	2015
26099045	Subclonal diversification of primary breast cancer revealed by multiregion sequencing.	Nat Med	2015
24728294	Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer.	Nat Genet	2014
25271376	Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer.	Elife	2014
24413735	RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia.	Nat Genet	2014
24633157	Recurrent PTPRB and PLCG1 mutations in angiosarcoma.	Nat Genet	2014
24714652	Processed pseudogenes acquired somatically during cancer development.	Nat Commun	2014
25082706	Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes.	Science	2014
24148783	The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models.	Genome Biol	2013
22608083	The life history of 21 breast cancers.	Cell	2012
22608084	Mutational processes molding the genomes of 21 breast cancers.	Cell	2012
21575258	Analysis of the mitogen-activated protein kinase kinase 4 (MAP2K4) tumor suppressor gene in ovarian cancer.	BMC Cancer	2011
20386695	Identification of candidate growth promoting genes in ovarian cancer through integrated copy number and expression analysis.	PLoS ONE	2010
20844748	Copy number analysis identifies novel interactions between genomic loci in ovarian cancer.	PLoS One	2010
21139216	Crystallization and preliminary X-ray crystallographic analysis of zebrafish prototype galectin Drgal1-L2.		2010
19603523	Are there any more ovarian tumor suppressor genes? A new perspective using ultra high-resolution copy number and loss of heterozygosity analysis.	Genes Chromosomes Cancer	2009
18953434	Mutation and methylation analysis of the chromodomain-helicase-DNA binding 5 gene in ovarian cancer.	Neoplasia	2008
18408720	No evidence of clonal somatic genetic alterations in cancer-associated fibroblasts from human breast and ovarian carcinomas.	Nat Genet	2008