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Author Details

Oliver Hofmann
University of Melbourne
1994
88
35
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34310709Cancer Predisposition Sequencing Reporter (CPSR): A flexible variant report engine for high-throughput germline screening in cancer.Int J Cancer2021
33543751Crypt4GH: a file format standard enabling native access to encrypted data.Bioinformatics2021
33797837Whole-genome sequencing reveals new Alzheimer's disease-associated rare variants in loci related to synaptic function and neuronal development.Alzheimers Dement2021
34260694Refget: standardized access to reference sequences.Bioinformatics2021
34310709Cancer Predisposition Sequencing Reporter (CPSR): A flexible variant report engine for high-throughput germline screening in cancer.Int J Cancer2021
33543751Crypt4GH: a file format standard enabling native access to encrypted data.Bioinformatics2021
33797837Whole-genome sequencing reveals new Alzheimer's disease-associated rare variants in loci related to synaptic function and neuronal development.Alzheimers Dement2021
34260694Refget: standardized access to reference sequences.Bioinformatics2021
32358589RAF1 rearrangements are common in pancreatic acinar cell carcinomas.Mod Pathol2020
32358589RAF1 rearrangements are common in pancreatic acinar cell carcinomas.Mod Pathol2020
32648276Inotuzumab ozogamicin resistance associated with a novel CD22 truncating mutation in a case of B-acute lymphoblastic leukaemia.Br J Haematol2020
33173892Whole-genome sequencing reveals new Alzheimer's disease-associated rare variants in loci related to synaptic function and neuronal development.medRxiv2020
32998969Aβ-accelerated neurodegeneration caused by Alzheimer's-associated <i>ACE</i> variant R1279Q is rescued by angiotensin system inhibition in mice.Sci Transl Med2020
33173892Whole-genome sequencing reveals new Alzheimer's disease-associated rare variants in loci related to synaptic function and neuronal development.medRxiv2020
32998969Aβ-accelerated neurodegeneration caused by Alzheimer's-associated <i>ACE</i> variant R1279Q is rescued by angiotensin system inhibition in mice.Sci Transl Med2020
32648276Inotuzumab ozogamicin resistance associated with a novel CD22 truncating mutation in a case of B-acute lymphoblastic leukaemia.Br J Haematol2020
30927468Preparing Australia for genomic medicine: data, computing and digital health.Med J Aust2019
30927468Preparing Australia for genomic medicine: data, computing and digital health.Med J Aust2019
30104763Copy number signatures and mutational processes in ovarian carcinoma.Nat Genet2018
30104763Copy number signatures and mutational processes in ovarian carcinoma.Nat Genet2018
27856273Hypermutation In Pancreatic Cancer.Gastroenterology2017
28392986Prioritisation of structural variant calls in cancer genomes.PeerJ2017
27856273Hypermutation In Pancreatic Cancer.Gastroenterology2017
28186563Silencing of the Drosophila ortholog of SOX5 leads to abnormal neuronal development and behavioral impairment.Hum Mol Genet2017
28186563Silencing of the Drosophila ortholog of SOX5 leads to abnormal neuronal development and behavioral impairment.Hum Mol Genet2017
28392986Prioritisation of structural variant calls in cancer genomes.PeerJ2017
27060149VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research.Nucleic Acids Res2016
27060149VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research.Nucleic Acids Res2016
26912621HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay.J Virol2016
27365422Phosphoproteomic profiling of mouse primary HSPCs reveals new regulators of HSPC mobilization.Blood2016
26909576Genomic analyses identify molecular subtypes of pancreatic cancer.Nature2016
26514153Mycoplasma Infection Alters Cancer Stem Cell Properties in Vitro.Stem Cell Rev Rep2016
26449608RNA Sequencing Identifies Novel Translational Biomarkers of Kidney Fibrosis.J Am Soc Nephrol2016
27613604Iterative sorting reveals CD133+ and CD133- melanoma cells as phenotypically distinct populations.BMC Cancer2016
27814745Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities.Breast Cancer Res2016
26514153Mycoplasma Infection Alters Cancer Stem Cell Properties in Vitro.Stem Cell Rev Rep2016
26449608RNA Sequencing Identifies Novel Translational Biomarkers of Kidney Fibrosis.J Am Soc Nephrol2016
27613604Iterative sorting reveals CD133+ and CD133- melanoma cells as phenotypically distinct populations.BMC Cancer2016
27814745Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities.Breast Cancer Res2016
27365422Phosphoproteomic profiling of mouse primary HSPCs reveals new regulators of HSPC mobilization.Blood2016
26912621HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay.J Virol2016
26909576Genomic analyses identify molecular subtypes of pancreatic cancer.Nature2016
26045559An RNA-binding Protein, Lin28, Recognizes and Remodels G-quartets in the MicroRNAs (miRNAs) and mRNAs It Regulates.J Biol Chem2015
26045559An RNA-binding Protein, Lin28, Recognizes and Remodels G-quartets in the MicroRNAs (miRNAs) and mRNAs It Regulates.J Biol Chem2015
23707565An in-depth comparison of the male pediatric and adult urinary proteomes.Biochim Biophys Acta2014
25296256Clonal dynamics of native haematopoiesis.Nature2014
23707565An in-depth comparison of the male pediatric and adult urinary proteomes.Biochim Biophys Acta2014
24675730CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments.Bioinformatics2014
24531798Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls.Nat Biotechnol2014
24670764A promoter-level mammalian expression atlas.Nature2014
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Collaborators

Winston Hide
Harvard Medical School
Co-authored papers 40
Brad A Chapman
Harvard T.H. Chan School of Public Health
Co-authored papers 12
Shannan J Ho Sui
Harvard T.H. Chan School of Public Health
Co-authored papers 8
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 7
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 6
Sean M Grimmond
The University of Melbourne
Co-authored papers 6
Christopher A Maher
Washington University in St Louis
Co-authored papers 5
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 4
Peter Kraft
Harvard T. H. Chan School of Public Health
Co-authored papers 4
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Eamonn Maguire
Oxford e-Research Centre, University of Oxford
Co-authored papers 4
Gabriel M Altschuler
Sheffield Institute for Translational Neuroscience, University of Sheffield
Co-authored papers 4
Rudolph E Tanzi
Co-authored papers 4
Sebastian Schmeier
Massey University
Co-authored papers 4
Judy Lieberman
Boston Children's Hospital
Co-authored papers 4
Susanna-Assunta Sansone
Oxford e-Research Centre, University of Oxford
Co-authored papers 4
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 4
Adele Kruger
Co-authored papers 4
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Otavia L Caballero
Ludwig Institute for Cancer Research Ltd.
Co-authored papers 3
Simon J Griffin
Co-authored papers 3
Wolfgang Rathmann
German Center for Diabetes Research
Co-authored papers 3
Torsten Lauritzen
Co-authored papers 3
Ayellet V Segrè
Co-authored papers 3
Laura J Scott
Co-authored papers 3
Neelam Hassanali
Co-authored papers 3
Noriko Ninomiya
Japan Tobacco Inc.
Co-authored papers 3
Soumya Raychaudhuri
Brigham and Women's Hospital and Harvard Medical School
Co-authored papers 3
Release 1.2