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Author Details

Lukas M Weber
Johns Hopkins Bloomberg School of Public Health
2014
20
13
PMIDPaper TitleJournal TitlePublished Year
37429865nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes.Nat Commun2023
37864274Performance of computational algorithms to deconvolve heterogeneous bulk ovarian tumor tissue depends on experimental factors.Genome Biol2023
36137652Complement downregulation promotes an inflammatory signature that renders colorectal cancer susceptible to immunotherapy.J Immunother Cancer2022
35482478SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.Bioinformatics2022
34428202miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data.PLoS Comput Biol2021
33603232Publisher Correction: Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex.Nat Neurosci2021
33558695Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex.Nat Neurosci2021
34553212Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design.Gigascience2021
34489590An updated guide for the perplexed: cytometry in the high-dimensional era.Nat Immunol2021
31957112Circulating neutrophil subsets in advanced lung cancer patients exhibit unique immune signature and relate to prognosis.FASEB J2020
31098416diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering.Commun Biol2019
31857895HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats.F1000Res2019
31221194Essential guidelines for computational method benchmarking.Genome Biol2019
29309059High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy.Nat Med2018
29967347Author Correction: High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy.Nat Med2018
27130213Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes.Development2016
28326979A Retrospective Study of the Effectiveness of Four Different Treatments of Periodontal Disease in Equine Cheek Teeth.J Vet Dent2016
27821550High-dimensional single-cell analysis reveals the immune signature of narcolepsy.J Exp Med2016
27992111Comparison of clustering methods for high-dimensional single-cell flow and mass cytometry data.Cytometry A2016
25278959Statistical methods for detecting differentially methylated loci and regions.Front Genet2014
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Collaborators

Mark D Robinson
University of Zurich
Co-authored papers 10
Stephanie C Hicks
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 6
Ariel A Hippen
University of Pennsylvania
Co-authored papers 3
Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 3
Reinhard Dummer
University Hospital Zurich
Co-authored papers 2
Thomas M Hyde
Co-authored papers 2
Joel E Kleinman
Lieber Institute for Brain Development (LIBD)
Co-authored papers 2
Mitchell P Levesque
University Hospital Zurich
Co-authored papers 2
Casey S Greene
Co-authored papers 2
Jennifer A Doherty
Huntsman Cancer Institute, University of Utah
Co-authored papers 2
Andrew E Jaffe
Co-authored papers 2
Jason Gertz
Huntsman Cancer Institute, University of Utah
Co-authored papers 1
Matias M Falco
University of Helsinki
Co-authored papers 1
Ronny Drapkin
University of Pennsylvania School of Medicine
Co-authored papers 1
Abdullah Kahraman
University of Zurich
Co-authored papers 1
Peter F Hickey
The Walter and Eliza Hall Institute of Medical Research
Co-authored papers 1
Euihye Jung
Penn Ovarian Cancer Research Center, University of Pennsylvania
Co-authored papers 1
Anna V??h??rautio
University of Helsinki
Co-authored papers 1
Martin Prlic
Fred Hutchinson Cancer Research Center
Co-authored papers 1
Dario Righelli
University of Padova
Co-authored papers 1
Dalia K Omran
Co-authored papers 1
Kristofer C Berrett
Huntsman Cancer Institute, The University of Utah
Co-authored papers 1
Erdogan Pekcan Erkan
University of Helsinki
Co-authored papers 1
Kaiyang Zhang
University of Helsinki
Co-authored papers 1
Charity W Law
The Walter and Eliza Hall Institute of Medical Research
Co-authored papers 1
Jennifer A Doherty
Huntsman Cancer Institute, University of Utah
Co-authored papers 1
Kasper D Hansen
Johns Hopkins University School of Medicine
Co-authored papers 1
Release 1.2