|
| 37037092 | The study of a novel CDK8 inhibitor E966-0530-45418 that inhibits prostate cancer metastasis in vitro and in vivo. | Biomed Pharmacother | 2023 |
| 37644119 | Improving quantitation accuracy in isobaric-labeling mass spectrometry experiments with spectral library searching and feature-based peptide-spectrum match filter. | Sci Rep | 2023 |
| 35132134 | Calibr improves spectral library search for spectrum-centric analysis of data independent acquisition proteomics. | Sci Rep | 2022 |
| 35601313 | Multiaspect Examinations of Possible Alternative Mappings of Identified Variant Peptides: A Case Study on the HEK293 Cell Line. | ACS Omega | 2022 |
| 33148401 | Comparison of different variant sequence types coupled with decoy generation methods used in concatenated target-decoy database searches for proteogenomic research. | J Proteomics | 2021 |
| 33726836 | EGFL6 promotes colorectal cancer cell growth and mobility and the anti-cancer property of anti-EGFL6 antibody. | Cell Biosci | 2021 |
| 33500711 | Erratum: TIMP3 expression associates with prognosis in colorectal cancer and its novel arylsulfonamide inducer, MPT0B390, inhibits tumor growth, metastasis and angiogenesis: Erratum. | Theranostics | 2021 |
| 33500498 | Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage. | Sci Rep | 2021 |
| 33953186 | A data-independent acquisition-based global phosphoproteomics system enables deep profiling. | Nat Commun | 2021 |
| 34142036 | Somatic mutation subtypes of lung adenocarcinoma in East Asian reveal divergent biological characteristics and therapeutic vulnerabilities. | iScience | 2021 |
| 32407886 | MinProtMaxVP: Generating a minimized number of protein variant sequences containing all possible variant peptides for proteogenomic analysis. | J Proteomics | 2020 |
| 32649875 | Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression. | Cell | 2020 |
| 31024851 | MPT0G413, A Novel HDAC6-Selective Inhibitor, and Bortezomib Synergistically Exert Anti-tumor Activity in Multiple Myeloma Cells. | Front Oncol | 2019 |
| 31685900 | N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding. | Sci Rep | 2019 |
| 31588243 | TIMP3 expression associates with prognosis in colorectal cancer and its novel arylsulfonamide inducer, MPT0B390, inhibits tumor growth, metastasis and angiogenesis. | Theranostics | 2019 |
| 31429573 | <i>i</i>HPDM: In Silico Human Proteome Digestion Map with Proteolytic Peptide Analysis and Graphical Visualizations. | J Proteome Res | 2019 |
| 31305071 | WinProphet: A User-Friendly Pipeline Management System for Proteomics Data Analysis Based on Trans-Proteomic Pipeline. | Anal Chem | 2019 |
| 29593536 | A Novel Dual HDAC6 and Tubulin Inhibitor, MPT0B451, Displays Anti-tumor Ability in Human Cancer Cells <i>in Vitro</i> and <i>in Vivo</i>. | Front Pharmacol | 2018 |
| 30203655 | Subcellular Proteome Landscape of Human Embryonic Stem Cells Revealed Missing Membrane Proteins. | J Proteome Res | 2018 |
| 30088773 | Evaluating the Possibility of Detecting Variants in Shotgun Proteomics via LeTE-Fusion Analysis Pipeline. | J Proteome Res | 2018 |
| 30594243 | The anticancer effects of MPT0G211, a novel HDAC6 inhibitor, combined with chemotherapeutic agents in human acute leukemia cells. | Clin Epigenetics | 2018 |
| 29567459 | 1-Aroylindoline-hydroxamic acids as anticancer agents, inhibitors of HSP90 and HDAC. | Eur J Med Chem | 2018 |
| 28929764 | Decoding the Effect of Isobaric Substitutions on Identifying Missing Proteins and Variant Peptides in Human Proteome. | J Proteome Res | 2017 |
| 28290473 | Phosphoproteomics Reveals HMGA1, a CK2 Substrate, as a Drug-Resistant Target in Non-Small Cell Lung Cancer. | Sci Rep | 2017 |
| 29165996 | iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm. | Anal Chem | 2017 |
| 26784691 | iMet-Q: A User-Friendly Tool for Label-Free Metabolomics Quantitation Using Dynamic Peak-Width Determination. | PLoS One | 2016 |
| 27344487 | 2-(Phenylsulfonyl)quinoline N-hydroxyacrylamides as potent anticancer agents inhibiting histone deacetylase. | Eur J Med Chem | 2016 |
| 27084943 | MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification. | Nucleic Acids Res | 2016 |
| 25543920 | Metabolite identification for mass spectrometry-based metabolomics using multiple types of correlated ion information. | Anal Chem | 2015 |
| 26554430 | Rapid High-pH Reverse Phase StageTip for Sensitive Small-Scale Membrane Proteomic Profiling. | Anal Chem | 2015 |
| 26549055 | Informatics View on the Challenges of Identifying Missing Proteins from Shotgun Proteomics. | J Proteome Res | 2015 |
| 26076068 | Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project. | J Proteome Res | 2015 |
| 26202522 | Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry. | J Proteome Res | 2015 |
| 25629585 | MAGIC: an automated N-linked glycoprotein identification tool using a Y1-ion pattern matching algorithm and in silico MS² approach. | Anal Chem | 2015 |
| 24313913 | Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography. | Anal Chem | 2014 |
| 24831074 | Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12. | J Proteome Res | 2014 |
| 23256888 | Decoding the disease-associated proteins encoded in the human chromosome 4. | J Proteome Res | 2013 |
| 24112406 | Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices. | BMC Bioinformatics | 2013 |
| 24146760 | Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations. | PLoS One | 2013 |
| 23560440 | Spectrum-based method to generate good decoy libraries for spectral library searching in peptide identifications. | J Proteome Res | 2013 |
| 22088210 | Phosphoproteomic analysis of human mesenchymal stromal cells during osteogenic differentiation. | J Proteome Res | 2012 |
| 23282098 | Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing. | BMC Bioinformatics | 2012 |
| 22761399 | Label-free quantitative proteomics and N-glycoproteomics analysis of KRAS-activated human bronchial epithelial cells. | Mol Cell Proteomics | 2012 |
| 22496884 | Computational comparative study of tuberculosis proteomes using a model learned from signal peptide structures. | PLoS One | 2012 |
| 21177659 | TMPad: an integrated structural database for helix-packing folds in transmembrane proteins. | Nucleic Acids Res | 2011 |
| 22163274 | Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words. | PLoS One | 2011 |
| 21637843 | Phosphoproteomics identifies oncogenic Ras signaling targets and their involvement in lung adenocarcinomas. | PLoS One | 2011 |
| 19752006 | IDEAL-Q, an automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation. | Mol Cell Proteomics | 2010 |
| 21143813 | Improving protein secondary structure prediction based on short subsequences with local structure similarity. | BMC Genomics | 2010 |
| 20815410 | An informatics-assisted label-free quantitation strategy that depicts phosphoproteomic profiles in lung cancer cell invasion. | J Proteome Res | 2010 |