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Author Details

Nozomu Yachie
The University of British Columbia
2006
59
21
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36598975A universal sequencing read interpreter.Sci Adv2023
37751737DNA-GPS: A theoretical framework for optics-free spatial genomics and synthesis of current methods.Cell Syst2023
37626232Tenure time loopers.Nat Biotechnol2023
37776859An AsCas12f-based compact genome-editing tool derived by deep mutational scanning and structural analysis.Cell2023
37217969Comprehensive behavioral analyses of mice with a glycine receptor alpha 4 deficiency.Mol Brain2023
35260779Engineered Campylobacter jejuni Cas9 variant with enhanced activity and broader targeting range.Commun Biol2022
35610233A framework to efficiently describe and share reproducible DNA materials and construction protocols.Nat Commun2022
35524126High-Throughput Gene Mutagenesis Screening Using Base Editing.Methods Mol Biol2022
35901151Molecular recorders to track cellular events.Science2022
34992246Deep distributed computing to reconstruct extremely large lineage trees.Nat Biotechnol2022
35137167Barcode fusion genetics-protein-fragment complementation assay (BFG-PCA): tools and resources that expand the potential for binary protein interaction discovery.Nucleic Acids Res2022
34228292Highly Multiplexed Analysis of CRISPR Genome Editing Outcomes in Mammalian Cells.Methods Mol Biol2021
34903756CRISPR/Cas9-mediated base-editing enables a chain reaction through sequential repair of sgRNA scaffold mutations.Sci Rep2021
34290253Machine learning approach for discrimination of genotypes based on bright-field cellular images.NPJ Syst Biol Appl2021
32483365Base editors for simultaneous introduction of C-to-T and A-to-G mutations.Nat Biotechnol2020
31668799Highly Combinatorial Genetic Interaction Analysis Reveals a Multi-Drug Transporter Influence Network.Cell Syst2020
33060198Interrogation of kinase genetic interactions provides a global view of PAK1-mediated signal transduction pathways.J Biol Chem2020
32392905Yeast-Based Genetic Interaction Analysis of Human Kinome.Cells2020
32313011Perturbing proteomes at single residue resolution using base editing.Nat Commun2020
32310226Use of Freeze-thawed Embryos for High-efficiency Production of Genetically Modified Mice.J Vis Exp2020
32504047Publisher Correction: Base editors for simultaneous introduction of C-to-T and A-to-G mutations.Nat Biotechnol2020
32299884Complete Genome Sequence of <i>Bacillus</i> sp. Strain KH172YL63, Isolated from Deep-Sea Sediment.Microbiol Resour Announc2020
30304510Fast and global detection of periodic sequence repeats in large genomic resources.Nucleic Acids Res2019
31844142A genome-scale CRISPR/Cas9 knockout screening reveals SH3D21 as a sensitizer for gemcitabine.Sci Rep2019
31212208DNA barcodes evolve for high-resolution cell lineage tracing.Curr Opin Chem Biol2019
31454312The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs.Elife2019
31200335DNA event recorders send past information of cells to the time of observation.Curr Opin Chem Biol2019
31000557Complete Genome Sequence of <i>Psychrobacter</i> sp. Strain KH172YL61, Isolated from Deep-Sea Sediments in the Nankai Trough, Japan.Microbiol Resour Announc2019
30936113<i>beditor</i>: A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing.Genetics2019
30097473Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast.G3 (Bethesda)2018
30166441Engineered CRISPR-Cas9 nuclease with expanded targeting space.Science2018
28566553Systematic analysis of Ca<sup>2+</sup> homeostasis in <i>Saccharomyces cerevisiae</i> based on chemical-genetic interaction profiles.Mol Biol Cell2017
28398329Robotic crowd biology with Maholo LabDroids.Nat Biotechnol2017
28596290Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target.Genome Res2017
27107012Pooled-matrix protein interaction screens using Barcode Fusion Genetics.Mol Syst Biol2016
27492474Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems.Science2016
26936925Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae.Genetics2016
25910212Widespread macromolecular interaction perturbations in human genetic disorders.Cell2015
23900518Identification of highly-disrupted tRNA genes in nuclear genome of the red alga, Cyanidioschyzon merolae 10D.Sci Rep2013
23271437The green monster process for the generation of yeast strains carrying multiple gene deletions.J Vis Exp2012
21338662Computational analysis suggests a highly bendable, fragile structure for nucleosomal DNA.Gene2011
21846408Tight associations between transcription promoter type and epigenetic variation in histone positioning and modification.BMC Genomics2011
21298081Integrative features of the yeast phosphoproteome and protein-protein interaction map.PLoS Comput Biol2011
20459641Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data.BMC Bioinformatics2010
19136663In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution.Mol Cell Proteomics2009
18832079Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales.Mol Biol Evol2008
19083123Stabilizing synthetic data in the DNA of living organisms.Syst Synth Biol2008
17253725Alignment-based approach for durable data storage into living organisms.Biotechnol Prog2007
17947580Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae.Science2007
17692847Bioinformatic analysis of post-transcriptional regulation by uORF in human and mouse.FEBS Lett2007
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Collaborators

Soh Ishiguro
The University of British Columbia
Co-authored papers 13
Hideto Mori
Research Center for Advanced Science and Technology, The University of Tokyo
Co-authored papers 13
Rintaro Saito
Institute for Advanced Biosciences, Keio University
Co-authored papers 9
Frederick P Roth
University of Toronto
Co-authored papers 7
Mamoru Tanaka
Tokyo University of Science
Co-authored papers 5
Marc Vidal
Blavatnik Institute, Harvard Medical School
Co-authored papers 5
Yasushi Ishihama
Graduate School of Pharmaceutical Sciences, Kyoto University
Co-authored papers 3
Nidhi Sahni
The University of Texas MD Anderson Cancer Center
Co-authored papers 2
Marinella Gebbia
University of Toronto
Co-authored papers 2
Naoki Konno
The University of Tokyo
Co-authored papers 2
Igor Stagljar
University of Toronto, Canada Mediterranean Institute for Life Sciences
Co-authored papers 2
Song Yi
Livestrong Cancer Institutes, Dell Medical School, The University of Texas at Austin
Co-authored papers 2
Diana Ascencio
Institut de Biologie Integrative et des Systemes, Universite Laval
Co-authored papers 2
Yu Xia
College of Information Engineering, Zhejiang University of Technology
Co-authored papers 1
Luke Whitesell
University of Toronto
Co-authored papers 1
Shamil R Sunyaev
Harvard Medical School
Co-authored papers 1
Bonnie Berger
Massachusetts Institute of Technology
Co-authored papers 1
Toshio Kitamura
The University of Tokyo.
Co-authored papers 1
Haiyuan Yu
Weill Institute for Cell and Molecular Biology, Cornell University
Co-authored papers 1
Dexter Pratt (CM4AI)
UC San Diego
Co-authored papers 1
Mandy H Y Lam
Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital
Co-authored papers 1
Susan Lindquist
Whitehead Institute for Biomedical Research
Co-authored papers 1
Yusuke Kijima
Research Center for Advanced Science and Technology, The University of Tokyo
Co-authored papers 1
Jian Peng
University of Illinois
Co-authored papers 1
Jasmin Coulombe-Huntington
Institute for Research in Immunology and Cancer, Universite de Montreal
Co-authored papers 1
Alan F Rubin
The Walter and Eliza Hall Institute of Medical Research
Co-authored papers 1
Wataru Iwasaki
the University of Tokyo
Co-authored papers 1
Stanley Fields
University of Washington
Co-authored papers 1
Omar O Abudayyeh
McGovern Institute for Brain Research at MIT Massachusetts Institute of Technology
Co-authored papers 1
Patrick Aloy
Institucio Catalana de Recerca i Estudis Avancats (ICREA)
Co-authored papers 1
Release 1.2