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Author Details

Kevin L Childs
Center for Genomics-Enabled Plant Science, Michigan State University
1991
76
35
PMIDPaper TitleJournal TitlePublished Year
36208288A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.).DNA Res2023
37415293Gene expression profiling of soaked dry beans (Phaseolus vulgaris L.) reveals cell wall modification plays a role in cooking time.Plant Genome2023
37426879Genome of tetraploid sour cherry (Prunus cerasus L.) 'Montmorency' identifies three distinct ancestral Prunus genomes.Hortic Res2023
35196067Development, Validation, and Utility of Species-Specific Diagnostic Markers for Detection of <i>Peronospora belbahrii</i>.Phytopathology2022
35976112Chromosome-scale genome assemblies and annotations for Poales species Carex cristatella, Carex scoparia, Juncus effusus, and Juncus inflexus.G3 (Bethesda)2022
34462605The bowfin genome illuminates the developmental evolution of ray-finned fishes.Nat Genet2021
32849854The Effector Repertoire of the Hop Downy Mildew Pathogen <i>Pseudoperonospora humuli</i>.Front Genet2020
31740503The Microalga <i>Nannochloropsis</i> during Transition from Quiescence to Autotrophy in Response to Nitrogen Availability.Plant Physiol2020
33036020Seeing through the forest: The gaze path to purchase.PLoS One2020
30760638Isoprene Acts as a Signaling Molecule in Gene Networks Important for Stress Responses and Plant Growth.Plant Physiol2019
31874598GPRED-GC: a Gene PREDiction model accounting for 5 <sup>'</sup>- 3<sup>'</sup> GC gradient.BMC Bioinformatics2019
31684862Assembly, annotation, and comparison of Macrophomina phaseolina isolates from strawberry and other hosts.BMC Genomics2019
31431676Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae.Sci Rep2019
31488573Allelic Variation in the Chloroplast Division Gene FtsZ2-2 Leads to Natural Variation in Chloroplast Size.Plant Physiol2019
31316533Transcriptional Regulation of the Glucose-6-Phosphate/Phosphate Translocator 2 Is Related to Carbon Exchange Across the Chloroplast Envelope.Front Plant Sci2019
30842601Author Correction: Origin and evolution of the octoploid strawberry genome.Nat Genet2019
30804557Origin and evolution of the octoploid strawberry genome.Nat Genet2019
30828342Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in <i>Viola pubescens</i>.Front Plant Sci2019
30939079Genome Sequencing and Transcriptome Analysis of the Hop Downy Mildew Pathogen <i>Pseudoperonospora humuli</i> Reveal Species-Specific Genes for Molecular Detection.Phytopathology2019
30936885Corrigendum: Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in <i>Viola pubescens</i>.Front Plant Sci2019
28605577A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced long-chain polyunsaturated fatty acid production.Plant Biotechnol J2018
30107523A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome.Gigascience2018
29178620Comparative genomics of Spiraeoideae-infecting Erwinia amylovora strains provides novel insight to genetic diversity and identifies the genetic basis of a low-virulence strain.Mol Plant Pathol2018
29253147Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.Gigascience2018
28542203Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779.PLoS Genet2017
29180698Dual impact of elevated temperature on plant defence and bacterial virulence in Arabidopsis.Nat Commun2017
29178822A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa.BMC Bioinformatics2017
29078296Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti.Proc Natl Acad Sci U S A2017
28814644Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.Plant Cell2017
27111258Analysis of salt-induced physiological and proline changes in 46 switchgrass (Panicum virgatum) lines indicates multiple response modes.Plant Physiol Biochem2016
27821048Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass.BMC Genomics2016
27978833Expansion and diversification of the MSDIN family of cyclic peptide genes in the poisonous agarics Amanita phalloides and A. bisporigera.BMC Genomics2016
27581540Fine mapping of the stem rust resistance gene SrTA10187.Theor Appl Genet2016
27803309Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.Plant Cell2016
25384563Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.Plant Physiol2015
26396590Assessment of drought tolerance of 49 switchgrass (Panicum virgatum) genotypes using physiological and morphological parameters.Biotechnol Biofuels2015
25759247Genome-guided investigation of plant natural product biosynthesis.Plant J2015
24306534MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.Plant Physiol2014
25228340A root-expressed L-phenylalanine:4-hydroxyphenylpyruvate aminotransferase is required for tropane alkaloid biosynthesis in Atropa belladonna.Plant Cell2014
24767513An improved genome release (version Mt4.0) for the model legume Medicago truncatula.BMC Genomics2014
24947485Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.Plant J2014
24710068Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of Developmental Timing in Seed Size Determination.Plant Physiol2014
24280374Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.Rice (N Y)2013
22250003The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species.Database (Oxford)2012
23166516Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779.PLoS Genet2012
23300689Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species.PLoS One2012
22732243Transcriptional and metabolic analysis of senescence induced by preventing pollination in maize.Plant Physiol2012
22545095Expression profiling of Cucumis sativus in response to infection by Pseudoperonospora cubensis.PLoS One2012
21123190Bovine Genome Database: integrated tools for genome annotation and discovery.Nucleic Acids Res2011
22046362The transcriptome of the reference potato genome Solanum tuberosum Group Phureja clone DM1-3 516R44.PLoS One2011
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Collaborators

University of Utah
Co-authored papers 5
University of Missouri
Co-authored papers 5
Lawrence Berkeley National Laboratory
Co-authored papers 5
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3
USDA-ARS
Co-authored papers 3
Texas A&M University, College Station
Co-authored papers 3
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Cornell University
Co-authored papers 2
Virginia Tech Carilion School of Medicine
Co-authored papers 2
Iowa State University
Co-authored papers 2
USDA ARS NAA Robert W. Holley Center for Agriculture and Health
Co-authored papers 2
First Institute of Oceanography
Co-authored papers 2
University of Utah
Co-authored papers 2
Colombia Universidad Central
Co-authored papers 2
Sage Science Inc.
Co-authored papers 2
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
USDA, Beltsville Agricultural Research Center
Co-authored papers 2
University of Wisconsin-Madison
Co-authored papers 2
Broad Institute of MIT and Harvard
Co-authored papers 2
Delphinai Corporation
Co-authored papers 1
Inivata Ltd.
Co-authored papers 1
Baylor College of Medicine
Co-authored papers 1
Oklahoma State University
Co-authored papers 1
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 1
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 1
Texas A&M University, College Station
Co-authored papers 1
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Arizona Genomics Institute, University of Arizona
Co-authored papers 1
Baylor College of Medicine
Co-authored papers 1