Author details

Full Name

Jo Vandesompele

Affiliation

ORCID

Career Start Year

1998

Papers

316

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36916500	Disclosing quantitative RT-PCR raw data during manuscript submission: a call for action.	Mol Oncol	2023
37954086	Exploring the cell-free total RNA transcriptome in diffuse large B-cell lymphoma and primary mediastinal B-cell lymphoma patients as biomarker source in blood plasma liquid biopsies.		2023
37401391	Digital PCR Partition Classification.		2023
37202906	Benchmarking blood collection tubes and processing intervals for extracellular vesicle performance metrics.		2023
36890441	Blocking Abundant RNA Transcripts by High-Affinity Oligonucleotides during Transcriptome Library Preparation.		2023
37443337	Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.	Nat Methods	2023
36683916	Longitudinal evaluation of serum microRNAs as biomarkers for neuroblastoma burden and therapeutic p53 reactivation.		2023
36990512	Artifacts and biases of the reverse transcription reaction in RNA sequencing.		2023
37039153	RNA Extraction Method Impacts Quality Metrics and Sequencing Results in Formalin-Fixed, Paraffin-Embedded Tissue Samples.		2023
34998206	RNA biomarkers from proximal liquid biopsy for diagnosis of ovarian cancer.	Neoplasia	2022
35459775	Evaluation of efficiency and sensitivity of 1D and 2D sample pooling strategies for SARS-CoV-2 RT-qPCR screening purposes.	Scientific Reports	2022
35454017	Nucleic Acid Biomarkers in WaldenstrÃ¶m Macroglobulinemia and IgM-MGUS: Current Insights and Clinical Relevance.	Diagnostics	2022
36304334	CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification.		2022
36304262	CiLiQuant: Quantification of RNA Junction Reads Based on Their Circular or Linear Transcript Origin.		2022
36232302	mRNA Capture Sequencing and RT-qPCR for the Detection of Pathognomonic, Novel, and Secondary Fusion Transcripts in FFPE Tissue: A Sarcoma Showcase.	International Journal of Molecular Sciences	2022
35633488	Performance Evaluation of Three DNA Sample Tracking Tools in a Whole Exome Sequencing Workflow.		2022
36323792	The Coronavirus Standards Working Group's roadmap for improved population testing.	Nat Biotechnol	2022
36587211	Digital PCR-based evaluation of nucleic acid extraction kit performance for the co-purification of cell-free DNA and RNA.		2022
36451702	Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA.		2022
34984553	Transient nuclear lamin A/C accretion aids in recovery from vapor nanobubble-induced permeabilisation of the plasma membrane.	Cellular and Molecular Life Sciences	2022
35288573	Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions.	Sci Data	2022
34508176	The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival.	Oncogene	2022
35207446	Reliable and Scalable SARS-CoV-2 qPCR Testing at a High Sample Throughput: Lessons Learned from the Belgian Initiative.	Life (Basel)	2022
34470578	Custom long non-coding RNA capture enhances detection sensitivity in different human sample types.	RNA Biology	2021
31998941	Closing the circle: current state and perspectives of circular RNA databases.	Briefings in Bioinformatics	2021
34232572	Validation of Circular RNAs Using RT-qPCR After Effective Removal of Linear RNAs by Ribonuclease R.	Current Protocols	2021
33937877	Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls.	STAR Protocols	2021
34140680	The RNA Atlas expands the catalog of human non-coding RNAs.	Nat Biotechnol	2021
34358676	Evaluating Diagnostic Accuracy of Saliva Sampling Methods for Severe Acute Respiratory Syndrome Coronavirus 2 Reveals Differential Sensitivity and Association with Viral Load.	Journal of Molecular Diagnostics	2021
34183863	Publisher Correction: The RNA Atlas expands the catalog of human non-coding RNAs.	Nat Biotechnol	2021
33918978	A G316A Polymorphism in the Ornithine Decarboxylase Gene Promoter Modulates MYCN-Driven Childhood Neuroblastoma.	Cancers (Basel)	2021
33257015	Candidate RNA biomarkers in biofluids for early diagnosis of ovarian cancer: A systematic review.	Gynecologic Oncology	2021
33310889	Targeted Therapy of <i>TERT</i>-Rearranged Neuroblastoma with BET Bromodomain Inhibitor and Proteasome Inhibitor Combination Therapy.	Clin Cancer Res	2021
33074045	Genome-wide study of the effect of blood collection tubes on the cell-free DNA methylome.	Epigenetics	2021
33336840	Recurrent chromosomal imbalances provide selective advantage to human embryonic stem cells under enhanced replicative stress conditions.	Genes Chromosomes Cancer	2021
32662719	Minimally invasive classification of paediatric solid tumours using reduced representation bisulphite sequencing of cell-free DNA: a proof-of-principle study.	Epigenetics	2021
34725485	MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity.	Nat Methods	2021
34429857	Robust sequential biophysical fractionation of blood plasma to study variations in the biomolecular landscape of systemically circulating extracellular vesicles across clinical conditions.	Journal of Extracellular Vesicles	2021
34359863	The MicroRNA Landscape of Acute Beta Cell Destruction in Type 1 Diabetic Recipients of Intraportal Islet Grafts.	Cells	2021
30518529	Increased levels of systemic LPS-positive bacterial extracellular vesicles in patients with intestinal barrier dysfunction.	Gut	2020
32255245	Distinct Notch1 and BCL11B requirements mediate human Î³Î´/Î±Î² T cell development.	EMBO Reports	2020
31904400	Vapor nanobubble is the more reliable photothermal mechanism for inducing endosomal escape of siRNA without disturbing cell homeostasis.	Journal of Controlled Release	2020
32065619	SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data.		2020
32493350	Correction to: On the utility of RNA sample pooling to optimize cost and statistical power in RNA sequencing experiments.	BMC Genomics	2020
32788394	When DNA gets in the way: A cautionary note for DNA contamination in extracellular RNA-seq studies.	Proceedings of the National Academy of Sciences of the United States of America	2020
32894756	Cautionary Note on Contamination of Reagents Used for Molecular Detection of SARS-CoV-2.	Clin Chem	2020
30770838	Cost-effective and robust genotyping using double-mismatch allele-specific quantitative PCR.	Scientific Reports	2019
31690716	The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35.	Nat Commun	2019
31772251	Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles.	Scientific Reports	2019
30461116	Long noncoding RNA expression profiling in cancer: Challenges and opportunities.	Genes Chromosomes and Cancer	2019