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Author Details

Karthik Gangavarapu
the Scripps Research Institute
2016
28
20
PMIDPaper TitleJournal TitlePublished Year
36823331Outbreak.info Research Library: a standardized, searchable platform to discover and explore COVID-19 resources.Nat Methods2023
37745602Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic.bioRxiv2023
36945693Many-core algorithms for high-dimensional gradients on phylogenetic trees.ArXiv2023
37265233Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation.Genome Biol Evol2023
36823332Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations.Nat Methods2023
35881005The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2.Science2022
35411350Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.medRxiv2022
35798029Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Nature2022
35970983Regional connectivity drove bidirectional transmission of SARS-CoV-2 in the Middle East during travel restrictions.Nat Commun2022
34261800Ebola vaccine-induced protection in nonhuman primates correlates with antibody specificity and Fc-mediated effects.Sci Transl Med2021
33789012Ebola Virus Transmission Initiated by Relapse of Systemic Ebola Virus Disease.N Engl J Med2021
33861950Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.Cell2021
34508652Emergence of an early SARS-CoV-2 epidemic in the United States.Cell2021
32513865Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.Science2020
33159066Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework.Nat Commun2020
32142546High crossreactivity of human T cell responses between Lassa virus lineages.PLoS Pathog2020
32269122Identification of Common CD8<sup>+</sup> T Cell Epitopes from Lassa Fever Survivors in Nigeria and Sierra Leone.J Virol2020
30621750An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar.Genome Biol2019
29346387Inferring the risk factors behind the geographical spread and transmission of Zika in the Americas.PLoS Negl Trop Dis2018
30096313Systematic Analysis of Monoclonal Antibodies against Ebola Virus GP Defines Features that Contribute to Protection.Cell2018
30092199A Role for Fc Function in Therapeutic Monoclonal Antibody-Mediated Protection against Ebola Virus.Cell Host Microbe2018
30038008Analysis of CD8<sup>+</sup> T cell response during the 2013-2016 Ebola epidemic in West Africa.Proc Natl Acad Sci U S A2018
28538723Genomic epidemiology reveals multiple introductions of Zika virus into the United States.Nature2017
28138153CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.Nat Genet2017
29267278Ontogeny of the B- and T-cell response in a primary Zika virus infection of a dengue-naïve individual during the 2016 outbreak in Miami, FL.PLoS Negl Trop Dis2017
28538739Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.Nat Protoc2017
28538734Zika virus evolution and spread in the Americas.Nature2017
27153723Branch: an interactive, web-based tool for testing hypotheses and developing predictive models.Bioinformatics2016
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Collaborators

Marc A Suchard
University of California los angeles
Co-authored papers 11
Refugio Robles-Sikisaka
The Scripps Research Institute
Co-authored papers 11
Mark Zeller
Rega Institute, University of Leuven
Co-authored papers 9
Nathan D Grubaugh
Yale School of Public Health
Co-authored papers 8
Nathaniel L Matteson
The Scripps Research Institute
Co-authored papers 8
Robert F Garry
Tulane University School of Medicine
Co-authored papers 7
Shirlee Wohl
The Scripps Research Institute
Co-authored papers 5
Pardis C Sabeti
Harvard University
Co-authored papers 5
Andrew Rambaut
Institute of Ecology and Evolution, University of Edinburgh
Co-authored papers 5
Edyth Parker
The Scripps Research Institute
Co-authored papers 4
Duncan MacCannell
Centers for Disease Control and Prevention
Co-authored papers 4
Gene W Yeo
University of California
Co-authored papers 4
Shashank Sathe
University of California, USA Institute for Genomic Medicine
Co-authored papers 4
Laura Nicholson
Scripps Clinic/Scripps Green Hospital
Co-authored papers 4
Philippe Lemey
Rega Institute, Laboratory of Clinical and Evolutionary Virology
Co-authored papers 4
Niema Moshiri
Bonita Vista High School, University of California San Diego, University of California, San Diego
Co-authored papers 4
Michael Worobey
University of Arizona
Co-authored papers 3
Glenn Oliveira
Faculdade de Medicina
Co-authored papers 3
John S Schieffelin
Tulane University
Co-authored papers 3
Nicholas J Loman
University of Birmingham
Co-authored papers 3
Galit Alter
Co-authored papers 3
Aaron Harding
Co-authored papers 3
Andrew I Su
The Scripps Research Institute
Co-authored papers 3
Elizabeth T Cirulli
Duke University
Co-authored papers 3
Joel O Wertheim
University of California
Co-authored papers 3
Magnus Isaksson
Uppsala University
Co-authored papers 3
Omid Bakhtar
University of Arizona Medical Center
Co-authored papers 3
Pedro Belda-Ferre
University of California San Diego
Co-authored papers 3
Alexandre Bolze
The Rockefeller University
Co-authored papers 3
Clarisse Marotz
University of California San Diego
Co-authored papers 3
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