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Author Details

Ian T Fiddes
Liver Center and Diabetes Center, University of California san francisco
1996
39
25
PMIDPaper TitleJournal TitlePublished Year
37163099Incomplete dosage balance and dosage compensation in the ZZ/ZW Gila monster (<i>Heloderma suspectum</i>) revealed by <i>de novo</i> genome assembly.bioRxiv2023
36017776A missense mutation in the proprotein convertase gene furinb causes hepatic cystogenesis during liver development in zebrafish.Hepatol Commun2022
35864110Author Correction: A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing.Nat Commun2022
33270111GENCODE 2021.Nucleic Acids Res2021
33953399A high-quality bonobo genome refines the analysis of hominid evolution.Nature2021
32231336Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing.Nat Biotechnol2020
33335035Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.Science2020
33177663Progressive Cactus is a multiple-genome aligner for the thousand-genome era.Nature2020
32728065Transcriptional activity and strain-specific history of mouse pseudogenes.Nat Commun2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32587328Single-cell sequencing of genomic DNA resolves sub-clonal heterogeneity in a melanoma cell line.Commun Biol2020
32330223scHLAcount: allele-specific HLA expression from single-cell gene expression data.Bioinformatics2020
32541955A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
30639214Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes.Stem Cell Reports2019
31531403Erratum: Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition.Commun Biol2019
31413257A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing.Nat Commun2019
30894395Resolving the full spectrum of human genome variation using Linked-Reads.Genome Res2019
30735633Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution.Cell2019
31087184Paired involvement of human-specific Olduvai domains and NOTCH2NL genes in human brain evolution.Hum Genet2019
30996023The Genome of C57BL/6J "Eve", the Mother of the Laboratory Mouse Genome Reference Strain.G3 (Bethesda)2019
30379572Whole-Genome Alignment and Comparative Annotation.Annu Rev Anim Biosci2019
30395234Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation.DNA Res2019
30357393GENCODE reference annotation for the human and mouse genomes.Nucleic Acids Res2019
29106570The UCSC Genome Browser database: 2018 update.Nucleic Acids Res2018
29884752Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation.Genome Res2018
29856954Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.Cell2018
29880660High-resolution comparative analysis of great ape genomes.Science2018
30456315Improved reference genome for the domestic horse increases assembly contiguity and composition.Commun Biol2018
30275530Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.Nat Genet2018
29565360Corrigendum: Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification.Nature2018
29563166Repeat associated mechanisms of genome evolution and function revealed by the <i>Mus caroli</i> and <i>Mus pahari</i> genomes.Genome Res2018
29431738Nanopore sequencing and assembly of a human genome with ultra-long reads.Nat Biotechnol2018
29798851Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells.Genome Res2018
29092041A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).Gigascience2017
28137821Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.Genome Res2017
27034376Long-read sequence assembly of the gorilla genome.Science2016
27411634Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification.Nature2016
25686389Improved data analysis for the MinION nanopore sequencer.Nat Methods2015
8757768In the absence of streptomycin, minoxidil potentiates the mitogenic effects of fetal calf serum, insulin-like growth factor 1, and platelet-derived growth factor on NIH 3T3 fibroblasts in a K+ channel-dependent fashion.J Invest Dermatol1996
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Collaborators

Benedict Paten
UC Santa Cruz Genomics Institute, University of California
Co-authored papers 17
Mark Diekhans
Genomics Institute, University of California Santa Cruz
Co-authored papers 13
Evan E Eichler
University of Washington
Co-authored papers 8
David Haussler
Genomics Institute, University of California Santa Cruz
Co-authored papers 8
Mark Gerstein
Yale University
Co-authored papers 5
Sofie R Salama
Genomics Institute, University of California Santa Cruz
Co-authored papers 5
Paul Flicek
European Bioinformatics Institute
Co-authored papers 5
Richard E Green
Co-authored papers 5
Thomas M Keane
European Bioinformatics Institute
Co-authored papers 4
Fabio C P Navarro
Yale University
Co-authored papers 4
LaDeana W Hillier
University of Washington
Co-authored papers 4
Mark J P Chaisson
University of Southern California
Co-authored papers 4
Joyce Lee
Co-authored papers 4
Adam Frankish
Co-authored papers 4
Alvaro Martinez Barrio
Uppsala University
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Carl Baker
University of Washington School of Medicine
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Tim Hubbard
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Duncan T Odom
Cancer Research UK Cambridge Institute, University of Cambridge
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Sergey Koren
National Human Genome Research Institute, National Institutes of Health
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Wesley C Warren
Institute of Informatics and Data Sciences, University of Missouri
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Robert S Fulton
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 3
Mario Stanke
Institut fur Mathematik und Informatik, Universitat Greifswald
Co-authored papers 3
Adam M Phillippy
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 3
Catrina Fronick
McDonnell Genome Institute, Washington University in St. Louis School of Medicine
Co-authored papers 2
Ryan E Mills
University of Michigan Medical School ann arbor
Co-authored papers 2
Neil C Chi
University of California San Diego
Co-authored papers 2
Camir Ricketts
Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University
Co-authored papers 2
Tomasz J Nowakowski
University of California san francisco
Co-authored papers 2
Alexandre Rouette
Charles-Bruneau Cancer Center, Centre Hospitalier Universitaire (CHU) Sainte-Justine
Co-authored papers 2
Nancy F Hansen
National Human Genome Research Institute, National Institutes of Health
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