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Author Details

Beg??m D Top??uo??lu
Merck & Co., Inc.
2015
16
8
PMIDPaper TitleJournal TitlePublished Year
37610205Very early life microbiome and metabolome correlates with primary vaccination variability in children.mSystems2023
37615431Machine learning classification by fitting amplicon sequences to existing OTUs.mSphere2023
35012354A Goldilocks Principle for the Gut Microbiome: Taxonomic Resolution Matters for Microbiome-Based Classification of Colorectal Cancer.mBio2022
34414351mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines.J Open Source Softw2021
33758094Erratum for Hagan et al., "Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis".mBio2021
33608294Seafloor Incubation Experiment with Deep-Sea Hydrothermal Vent Fluid Reveals Effect of Pressure and Lag Time on Autotrophic Microbial Communities.Appl Environ Microbiol2021
34835271Vaccine Hyporesponse Induced by Individual Antibiotic Treatment in Mice and Non-Human Primates Is Diminished upon Recovery of the Gut Microbiome.Vaccines (Basel)2021
32518182A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems.mBio2020
33262256Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis.mBio2020
32853198Ten simple rules to increase computational skills among biologists with Code Clubs.PLoS Comput Biol2020
30824444Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile <i>Methanocaldococcus jannaschii</i> during Hydrogen-Limited Growth and Interspecies Hydrogen Transfer.Appl Environ Microbiol2019
31266879Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure.mBio2019
29235714Formate hydrogenlyase and formate secretion ameliorate H<sub>2</sub> inhibition in the hyperthermophilic archaeon Thermococcus paralvinellae.Environ Microbiol2018
27547206Hydrogen Limitation and Syntrophic Growth among Natural Assemblages of Thermophilic Methanogens at Deep-sea Hydrothermal Vents.Front Microbiol2016
27352007Alterations of the human gut microbiome in multiple sclerosis.Nat Commun2016
25762989Long-term forest soil warming alters microbial communities in temperate forest soils.Front Microbiol2015
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Collaborators

Patrick D Schloss
University of Michigan ann arbor
Co-authored papers 8
Jenna Wiens
University of Michigan College of Engineering ann arbor
Co-authored papers 3
Nicholas A Lesniak
University of Michigan.
Co-authored papers 3
Ada K Hagan
University of Michigan ann arbor
Co-authored papers 3
Geoffrey D Hannigan
Merck & Co., Inc.
Co-authored papers 2
Cem Meydan
Co-authored papers 2
Mack T Ruffin
Penn State College of Medicine, The Pennsylvania State University
Co-authored papers 2
Marc A Sze
University of Michigan ann arbor
Co-authored papers 2
Kristen M DeAngelis
University of Massachusetts
Co-authored papers 1
Amanda G Elmore
University of Michigan ann arbor
Co-authored papers 1
Joshua M A Stough
University of Michigan ann arbor
Co-authored papers 1
Ariangela J Kozik
University of Michigan ann arbor
Co-authored papers 1
Sarah Tomkovich
University of Michigan.
Co-authored papers 1
Howard L Weiner
Co-authored papers 1
Jane Fontenot
Co-authored papers 1
Lynn Bry
Co-authored papers 1
Matthew L Jenior
University of Virginia
Co-authored papers 1
Matthew D Doherty
University of Michigan ann arbor
Co-authored papers 1
Samara Rifkin
Rogel Cancer Center, University of Michigan ann arbor
Co-authored papers 1
Kaitlin J Flynn
Center for Systems Immunology, Benaroya Research Institute at Virginia Mason
Co-authored papers 1
William Close
The University of Sydney
Co-authored papers 1
Kelly L Sovacool
University of Michigan ann arbor
Co-authored papers 1
Lucas Bishop
University of Michigan ann arbor
Co-authored papers 1
Marcy J Balunas
Department of Pharmaceutical Sciences, University of Connecticut
Co-authored papers 1
Kathryn McBride
University of Michigan ann arbor
Co-authored papers 1
Philip L De Jager
Columbia University Medical Center
Co-authored papers 1
Daria J Hazuda
Merck & Co. Inc.
Co-authored papers 1
Charles C Koumpouras
University of Michigan ann arbor
Co-authored papers 1
Release 1.2